diff --git a/tools/Makefile.in b/tools/Makefile.in
index 71bd896b8a0..453d41e06e1 100644
--- a/tools/Makefile.in
+++ b/tools/Makefile.in
@@ -3,8 +3,8 @@ PROGRAMS = \
 	make_xftmpl
 
 SOURCES = \
-	makedep.c \
 	make_xftmpl.c \
+	makedep.c \
 	wineapploader.in
 
 makedep_OBJS = makedep.o
diff --git a/tools/make_makefiles b/tools/make_makefiles
index f3f9329fe63..646a70d18f4 100755
--- a/tools/make_makefiles
+++ b/tools/make_makefiles
@@ -41,7 +41,6 @@ my %modules16 =
 my %ignored_source_files = (
     "dlls/wineps.drv/afm2c.c" => 1,
     "dlls/wineps.drv/mkagl.c" => 1,
-    "tools/makedep.c" => 1,
 );
 
 my (@makefiles, %makefiles);