diff --git a/editor/import/3d/editor_import_collada.cpp b/editor/import/3d/editor_import_collada.cpp
index 49fec679bf8f..b7dabf027b97 100644
--- a/editor/import/3d/editor_import_collada.cpp
+++ b/editor/import/3d/editor_import_collada.cpp
@@ -41,8 +41,8 @@
 #include "scene/3d/path_3d.h"
 #include "scene/3d/skeleton_3d.h"
 #include "scene/animation/animation_player.h"
+#include "scene/resources/3d/importer_mesh.h"
 #include "scene/resources/animation.h"
-#include "scene/resources/importer_mesh.h"
 #include "scene/resources/packed_scene.h"
 #include "scene/resources/surface_tool.h"
 
diff --git a/editor/import/3d/resource_importer_obj.cpp b/editor/import/3d/resource_importer_obj.cpp
index 4b340ea997ff..52d1b45ac246 100644
--- a/editor/import/3d/resource_importer_obj.cpp
+++ b/editor/import/3d/resource_importer_obj.cpp
@@ -35,7 +35,7 @@
 #include "scene/3d/importer_mesh_instance_3d.h"
 #include "scene/3d/mesh_instance_3d.h"
 #include "scene/3d/node_3d.h"
-#include "scene/resources/importer_mesh.h"
+#include "scene/resources/3d/importer_mesh.h"
 #include "scene/resources/mesh.h"
 #include "scene/resources/surface_tool.h"
 
diff --git a/editor/import/3d/resource_importer_scene.cpp b/editor/import/3d/resource_importer_scene.cpp
index 7a51394bbc23..3310d6f298f7 100644
--- a/editor/import/3d/resource_importer_scene.cpp
+++ b/editor/import/3d/resource_importer_scene.cpp
@@ -46,15 +46,15 @@
 #include "scene/3d/physics_body_3d.h"
 #include "scene/3d/vehicle_body_3d.h"
 #include "scene/animation/animation_player.h"
+#include "scene/resources/3d/box_shape_3d.h"
+#include "scene/resources/3d/importer_mesh.h"
+#include "scene/resources/3d/separation_ray_shape_3d.h"
+#include "scene/resources/3d/sphere_shape_3d.h"
+#include "scene/resources/3d/world_boundary_shape_3d.h"
 #include "scene/resources/animation.h"
-#include "scene/resources/box_shape_3d.h"
-#include "scene/resources/importer_mesh.h"
 #include "scene/resources/packed_scene.h"
 #include "scene/resources/resource_format_text.h"
-#include "scene/resources/separation_ray_shape_3d.h"
-#include "scene/resources/sphere_shape_3d.h"
 #include "scene/resources/surface_tool.h"
-#include "scene/resources/world_boundary_shape_3d.h"
 
 uint32_t EditorSceneFormatImporter::get_import_flags() const {
 	uint32_t ret;
diff --git a/editor/import/3d/resource_importer_scene.h b/editor/import/3d/resource_importer_scene.h
index f82a5aa9e9d2..dbf7794b6184 100644
--- a/editor/import/3d/resource_importer_scene.h
+++ b/editor/import/3d/resource_importer_scene.h
@@ -35,14 +35,14 @@
 #include "core/io/resource_importer.h"
 #include "core/variant/dictionary.h"
 #include "scene/3d/importer_mesh_instance_3d.h"
+#include "scene/resources/3d/box_shape_3d.h"
+#include "scene/resources/3d/capsule_shape_3d.h"
+#include "scene/resources/3d/cylinder_shape_3d.h"
+#include "scene/resources/3d/importer_mesh.h"
+#include "scene/resources/3d/skin.h"
+#include "scene/resources/3d/sphere_shape_3d.h"
 #include "scene/resources/animation.h"
-#include "scene/resources/box_shape_3d.h"
-#include "scene/resources/capsule_shape_3d.h"
-#include "scene/resources/cylinder_shape_3d.h"
-#include "scene/resources/importer_mesh.h"
 #include "scene/resources/mesh.h"
-#include "scene/resources/shape_3d.h"
-#include "scene/resources/sphere_shape_3d.h"
 
 class Material;
 class AnimationPlayer;
diff --git a/editor/import/3d/scene_import_settings.cpp b/editor/import/3d/scene_import_settings.cpp
index 53d7e63dbb7c..aeff01fc85ab 100644
--- a/editor/import/3d/scene_import_settings.cpp
+++ b/editor/import/3d/scene_import_settings.cpp
@@ -40,7 +40,7 @@
 #include "editor/themes/editor_scale.h"
 #include "scene/3d/importer_mesh_instance_3d.h"
 #include "scene/animation/animation_player.h"
-#include "scene/resources/importer_mesh.h"
+#include "scene/resources/3d/importer_mesh.h"
 #include "scene/resources/surface_tool.h"
 
 class SceneImportSettingsData : public Object {
diff --git a/editor/import/3d/scene_import_settings.h b/editor/import/3d/scene_import_settings.h
index c6c416daba97..05682551b790 100644
--- a/editor/import/3d/scene_import_settings.h
+++ b/editor/import/3d/scene_import_settings.h
@@ -46,7 +46,7 @@
 #include "scene/gui/subviewport_container.h"
 #include "scene/gui/tab_container.h"
 #include "scene/gui/tree.h"
-#include "scene/resources/primitive_meshes.h"
+#include "scene/resources/3d/primitive_meshes.h"
 
 class EditorFileDialog;
 class EditorInspector;
diff --git a/editor/plugins/collision_shape_2d_editor_plugin.cpp b/editor/plugins/collision_shape_2d_editor_plugin.cpp
index 31918586576f..12dde4619327 100644
--- a/editor/plugins/collision_shape_2d_editor_plugin.cpp
+++ b/editor/plugins/collision_shape_2d_editor_plugin.cpp
@@ -35,14 +35,14 @@
 #include "editor/editor_node.h"
 #include "editor/editor_settings.h"
 #include "editor/editor_undo_redo_manager.h"
-#include "scene/resources/capsule_shape_2d.h"
-#include "scene/resources/circle_shape_2d.h"
-#include "scene/resources/concave_polygon_shape_2d.h"
-#include "scene/resources/convex_polygon_shape_2d.h"
-#include "scene/resources/rectangle_shape_2d.h"
-#include "scene/resources/segment_shape_2d.h"
-#include "scene/resources/separation_ray_shape_2d.h"
-#include "scene/resources/world_boundary_shape_2d.h"
+#include "scene/resources/2d/capsule_shape_2d.h"
+#include "scene/resources/2d/circle_shape_2d.h"
+#include "scene/resources/2d/concave_polygon_shape_2d.h"
+#include "scene/resources/2d/convex_polygon_shape_2d.h"
+#include "scene/resources/2d/rectangle_shape_2d.h"
+#include "scene/resources/2d/segment_shape_2d.h"
+#include "scene/resources/2d/separation_ray_shape_2d.h"
+#include "scene/resources/2d/world_boundary_shape_2d.h"
 #include "scene/scene_string_names.h"
 
 CollisionShape2DEditor::CollisionShape2DEditor() {
diff --git a/editor/plugins/gizmos/collision_shape_3d_gizmo_plugin.cpp b/editor/plugins/gizmos/collision_shape_3d_gizmo_plugin.cpp
index 2695253b7808..3cf916446074 100644
--- a/editor/plugins/gizmos/collision_shape_3d_gizmo_plugin.cpp
+++ b/editor/plugins/gizmos/collision_shape_3d_gizmo_plugin.cpp
@@ -37,15 +37,15 @@
 #include "editor/plugins/gizmos/gizmo_3d_helper.h"
 #include "editor/plugins/node_3d_editor_plugin.h"
 #include "scene/3d/collision_shape_3d.h"
-#include "scene/resources/box_shape_3d.h"
-#include "scene/resources/capsule_shape_3d.h"
-#include "scene/resources/concave_polygon_shape_3d.h"
-#include "scene/resources/convex_polygon_shape_3d.h"
-#include "scene/resources/cylinder_shape_3d.h"
-#include "scene/resources/height_map_shape_3d.h"
-#include "scene/resources/separation_ray_shape_3d.h"
-#include "scene/resources/sphere_shape_3d.h"
-#include "scene/resources/world_boundary_shape_3d.h"
+#include "scene/resources/3d/box_shape_3d.h"
+#include "scene/resources/3d/capsule_shape_3d.h"
+#include "scene/resources/3d/concave_polygon_shape_3d.h"
+#include "scene/resources/3d/convex_polygon_shape_3d.h"
+#include "scene/resources/3d/cylinder_shape_3d.h"
+#include "scene/resources/3d/height_map_shape_3d.h"
+#include "scene/resources/3d/separation_ray_shape_3d.h"
+#include "scene/resources/3d/sphere_shape_3d.h"
+#include "scene/resources/3d/world_boundary_shape_3d.h"
 
 CollisionShape3DGizmoPlugin::CollisionShape3DGizmoPlugin() {
 	helper.instantiate();
diff --git a/editor/plugins/gizmos/spring_arm_3d_gizmo_plugin.cpp b/editor/plugins/gizmos/spring_arm_3d_gizmo_plugin.cpp
index cf022fc30f56..69acac5a8910 100644
--- a/editor/plugins/gizmos/spring_arm_3d_gizmo_plugin.cpp
+++ b/editor/plugins/gizmos/spring_arm_3d_gizmo_plugin.cpp
@@ -33,7 +33,7 @@
 #include "editor/editor_settings.h"
 #include "editor/plugins/node_3d_editor_plugin.h"
 #include "scene/3d/spring_arm_3d.h"
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 void SpringArm3DGizmoPlugin::redraw(EditorNode3DGizmo *p_gizmo) {
 	SpringArm3D *spring_arm = Object::cast_to<SpringArm3D>(p_gizmo->get_node_3d());
diff --git a/editor/plugins/material_editor_plugin.cpp b/editor/plugins/material_editor_plugin.cpp
index b7c447950516..ba64c85b37cc 100644
--- a/editor/plugins/material_editor_plugin.cpp
+++ b/editor/plugins/material_editor_plugin.cpp
@@ -43,9 +43,9 @@
 #include "scene/gui/color_rect.h"
 #include "scene/gui/subviewport_container.h"
 #include "scene/main/viewport.h"
-#include "scene/resources/fog_material.h"
+#include "scene/resources/3d/fog_material.h"
+#include "scene/resources/3d/sky_material.h"
 #include "scene/resources/particle_process_material.h"
-#include "scene/resources/sky_material.h"
 
 void MaterialEditor::gui_input(const Ref<InputEvent> &p_event) {
 	ERR_FAIL_COND(p_event.is_null());
diff --git a/editor/plugins/material_editor_plugin.h b/editor/plugins/material_editor_plugin.h
index 5530592a8158..5d79d94aafd8 100644
--- a/editor/plugins/material_editor_plugin.h
+++ b/editor/plugins/material_editor_plugin.h
@@ -34,8 +34,8 @@
 #include "editor/editor_inspector.h"
 #include "editor/editor_plugin.h"
 #include "editor/plugins/editor_resource_conversion_plugin.h"
+#include "scene/resources/3d/primitive_meshes.h"
 #include "scene/resources/material.h"
-#include "scene/resources/primitive_meshes.h"
 
 class Camera3D;
 class ColorRect;
diff --git a/editor/plugins/mesh_instance_3d_editor_plugin.cpp b/editor/plugins/mesh_instance_3d_editor_plugin.cpp
index 9669f992a831..061b839ee363 100644
--- a/editor/plugins/mesh_instance_3d_editor_plugin.cpp
+++ b/editor/plugins/mesh_instance_3d_editor_plugin.cpp
@@ -42,9 +42,9 @@
 #include "scene/gui/dialogs.h"
 #include "scene/gui/menu_button.h"
 #include "scene/gui/spin_box.h"
-#include "scene/resources/concave_polygon_shape_3d.h"
-#include "scene/resources/convex_polygon_shape_3d.h"
-#include "scene/resources/primitive_meshes.h"
+#include "scene/resources/3d/concave_polygon_shape_3d.h"
+#include "scene/resources/3d/convex_polygon_shape_3d.h"
+#include "scene/resources/3d/primitive_meshes.h"
 #include "scene/scene_string_names.h"
 
 void MeshInstance3DEditor::_node_removed(Node *p_node) {
diff --git a/editor/plugins/mesh_library_editor_plugin.h b/editor/plugins/mesh_library_editor_plugin.h
index 7bdc70a00bc2..3895d10c3705 100644
--- a/editor/plugins/mesh_library_editor_plugin.h
+++ b/editor/plugins/mesh_library_editor_plugin.h
@@ -32,7 +32,7 @@
 #define MESH_LIBRARY_EDITOR_PLUGIN_H
 
 #include "editor/editor_plugin.h"
-#include "scene/resources/mesh_library.h"
+#include "scene/resources/3d/mesh_library.h"
 
 class EditorFileDialog;
 class ConfirmationDialog;
diff --git a/editor/plugins/node_3d_editor_gizmos.cpp b/editor/plugins/node_3d_editor_gizmos.cpp
index 77ed48a6624c..085e8cddbea2 100644
--- a/editor/plugins/node_3d_editor_gizmos.cpp
+++ b/editor/plugins/node_3d_editor_gizmos.cpp
@@ -36,7 +36,7 @@
 #include "editor/editor_settings.h"
 #include "editor/editor_string_names.h"
 #include "editor/plugins/node_3d_editor_plugin.h"
-#include "scene/resources/primitive_meshes.h"
+#include "scene/resources/3d/primitive_meshes.h"
 
 #define HANDLE_HALF_SIZE 9.5
 
diff --git a/editor/plugins/node_3d_editor_plugin.cpp b/editor/plugins/node_3d_editor_plugin.cpp
index 64590653a4eb..4e462cfe34bc 100644
--- a/editor/plugins/node_3d_editor_plugin.cpp
+++ b/editor/plugins/node_3d_editor_plugin.cpp
@@ -90,8 +90,8 @@
 #include "scene/gui/flow_container.h"
 #include "scene/gui/split_container.h"
 #include "scene/gui/subviewport_container.h"
+#include "scene/resources/3d/sky_material.h"
 #include "scene/resources/packed_scene.h"
-#include "scene/resources/sky_material.h"
 #include "scene/resources/surface_tool.h"
 
 constexpr real_t DISTANCE_DEFAULT = 4;
diff --git a/editor/plugins/skeleton_3d_editor_plugin.cpp b/editor/plugins/skeleton_3d_editor_plugin.cpp
index 53fdde9e1424..b6a6c8968ee8 100644
--- a/editor/plugins/skeleton_3d_editor_plugin.cpp
+++ b/editor/plugins/skeleton_3d_editor_plugin.cpp
@@ -46,9 +46,8 @@
 #include "scene/3d/physics_body_3d.h"
 #include "scene/gui/separator.h"
 #include "scene/gui/texture_rect.h"
-#include "scene/resources/capsule_shape_3d.h"
+#include "scene/resources/3d/capsule_shape_3d.h"
 #include "scene/resources/skeleton_profile.h"
-#include "scene/resources/sphere_shape_3d.h"
 #include "scene/resources/surface_tool.h"
 #include "scene/scene_string_names.h"
 
diff --git a/editor/plugins/tiles/atlas_merging_dialog.h b/editor/plugins/tiles/atlas_merging_dialog.h
index 324cc8249022..2517db2ccd44 100644
--- a/editor/plugins/tiles/atlas_merging_dialog.h
+++ b/editor/plugins/tiles/atlas_merging_dialog.h
@@ -35,7 +35,7 @@
 #include "scene/gui/dialogs.h"
 #include "scene/gui/item_list.h"
 #include "scene/gui/texture_rect.h"
-#include "scene/resources/tile_set.h"
+#include "scene/resources/2d/tile_set.h"
 
 class EditorFileDialog;
 class EditorPropertyVector2i;
diff --git a/editor/plugins/tiles/tile_atlas_view.h b/editor/plugins/tiles/tile_atlas_view.h
index e5b088af6138..e5b4863b05f9 100644
--- a/editor/plugins/tiles/tile_atlas_view.h
+++ b/editor/plugins/tiles/tile_atlas_view.h
@@ -37,7 +37,7 @@
 #include "scene/gui/center_container.h"
 #include "scene/gui/label.h"
 #include "scene/gui/margin_container.h"
-#include "scene/resources/tile_set.h"
+#include "scene/resources/2d/tile_set.h"
 
 class ViewPanner;
 
diff --git a/editor/plugins/tiles/tile_set_atlas_source_editor.h b/editor/plugins/tiles/tile_set_atlas_source_editor.h
index b98705baf17d..322de8104592 100644
--- a/editor/plugins/tiles/tile_set_atlas_source_editor.h
+++ b/editor/plugins/tiles/tile_set_atlas_source_editor.h
@@ -35,7 +35,7 @@
 #include "tile_data_editors.h"
 
 #include "scene/gui/split_container.h"
-#include "scene/resources/tile_set.h"
+#include "scene/resources/2d/tile_set.h"
 
 class Popup;
 class TileSet;
diff --git a/editor/plugins/tiles/tile_set_editor.h b/editor/plugins/tiles/tile_set_editor.h
index 755b940db2a0..68ab046ecff9 100644
--- a/editor/plugins/tiles/tile_set_editor.h
+++ b/editor/plugins/tiles/tile_set_editor.h
@@ -33,7 +33,7 @@
 
 #include "atlas_merging_dialog.h"
 #include "scene/gui/tab_bar.h"
-#include "scene/resources/tile_set.h"
+#include "scene/resources/2d/tile_set.h"
 #include "tile_proxies_manager_dialog.h"
 #include "tile_set_atlas_source_editor.h"
 #include "tile_set_scenes_collection_source_editor.h"
diff --git a/editor/plugins/tiles/tile_set_scenes_collection_source_editor.h b/editor/plugins/tiles/tile_set_scenes_collection_source_editor.h
index 82de063a0768..5527685b2421 100644
--- a/editor/plugins/tiles/tile_set_scenes_collection_source_editor.h
+++ b/editor/plugins/tiles/tile_set_scenes_collection_source_editor.h
@@ -33,7 +33,7 @@
 
 #include "editor/editor_inspector.h"
 #include "scene/gui/box_container.h"
-#include "scene/resources/tile_set.h"
+#include "scene/resources/2d/tile_set.h"
 
 class Button;
 class ItemList;
diff --git a/editor/plugins/tiles/tiles_editor_plugin.cpp b/editor/plugins/tiles/tiles_editor_plugin.cpp
index 46bc072c1803..e7bf812a6c79 100644
--- a/editor/plugins/tiles/tiles_editor_plugin.cpp
+++ b/editor/plugins/tiles/tiles_editor_plugin.cpp
@@ -47,8 +47,8 @@
 #include "scene/gui/button.h"
 #include "scene/gui/control.h"
 #include "scene/gui/separator.h"
+#include "scene/resources/2d/tile_set.h"
 #include "scene/resources/image_texture.h"
-#include "scene/resources/tile_set.h"
 
 TilesEditorUtils *TilesEditorUtils::singleton = nullptr;
 TileMapEditorPlugin *tile_map_plugin_singleton = nullptr;
diff --git a/modules/csg/csg_shape.h b/modules/csg/csg_shape.h
index 6ac71b694602..bb7c8be43155 100644
--- a/modules/csg/csg_shape.h
+++ b/modules/csg/csg_shape.h
@@ -35,7 +35,7 @@
 
 #include "scene/3d/path_3d.h"
 #include "scene/3d/visual_instance_3d.h"
-#include "scene/resources/concave_polygon_shape_3d.h"
+#include "scene/resources/3d/concave_polygon_shape_3d.h"
 
 #include "thirdparty/misc/mikktspace.h"
 
diff --git a/modules/gltf/extensions/gltf_document_extension_convert_importer_mesh.cpp b/modules/gltf/extensions/gltf_document_extension_convert_importer_mesh.cpp
index 2af716b86771..1e64a6daa432 100644
--- a/modules/gltf/extensions/gltf_document_extension_convert_importer_mesh.cpp
+++ b/modules/gltf/extensions/gltf_document_extension_convert_importer_mesh.cpp
@@ -32,7 +32,7 @@
 
 #include "scene/3d/importer_mesh_instance_3d.h"
 #include "scene/3d/mesh_instance_3d.h"
-#include "scene/resources/importer_mesh.h"
+#include "scene/resources/3d/importer_mesh.h"
 
 void GLTFDocumentExtensionConvertImporterMesh::_bind_methods() {
 }
diff --git a/modules/gltf/extensions/physics/gltf_physics_shape.cpp b/modules/gltf/extensions/physics/gltf_physics_shape.cpp
index af4ac10313f1..467499a03f79 100644
--- a/modules/gltf/extensions/physics/gltf_physics_shape.cpp
+++ b/modules/gltf/extensions/physics/gltf_physics_shape.cpp
@@ -34,13 +34,13 @@
 
 #include "core/math/convex_hull.h"
 #include "scene/3d/area_3d.h"
-#include "scene/resources/box_shape_3d.h"
-#include "scene/resources/capsule_shape_3d.h"
-#include "scene/resources/concave_polygon_shape_3d.h"
-#include "scene/resources/convex_polygon_shape_3d.h"
-#include "scene/resources/cylinder_shape_3d.h"
-#include "scene/resources/importer_mesh.h"
-#include "scene/resources/sphere_shape_3d.h"
+#include "scene/resources/3d/box_shape_3d.h"
+#include "scene/resources/3d/capsule_shape_3d.h"
+#include "scene/resources/3d/concave_polygon_shape_3d.h"
+#include "scene/resources/3d/convex_polygon_shape_3d.h"
+#include "scene/resources/3d/cylinder_shape_3d.h"
+#include "scene/resources/3d/importer_mesh.h"
+#include "scene/resources/3d/sphere_shape_3d.h"
 
 void GLTFPhysicsShape::_bind_methods() {
 	ClassDB::bind_static_method("GLTFPhysicsShape", D_METHOD("from_node", "shape_node"), &GLTFPhysicsShape::from_node);
diff --git a/modules/gltf/gltf_document.cpp b/modules/gltf/gltf_document.cpp
index 7949d64920db..740c9a2aa739 100644
--- a/modules/gltf/gltf_document.cpp
+++ b/modules/gltf/gltf_document.cpp
@@ -50,9 +50,9 @@
 #include "scene/3d/light_3d.h"
 #include "scene/3d/mesh_instance_3d.h"
 #include "scene/3d/multimesh_instance_3d.h"
+#include "scene/resources/3d/skin.h"
 #include "scene/resources/image_texture.h"
 #include "scene/resources/portable_compressed_texture.h"
-#include "scene/resources/skin.h"
 #include "scene/resources/surface_tool.h"
 
 #ifdef TOOLS_ENABLED
diff --git a/modules/gltf/structures/gltf_mesh.cpp b/modules/gltf/structures/gltf_mesh.cpp
index d04d3fcd7ffe..9566cc2379b0 100644
--- a/modules/gltf/structures/gltf_mesh.cpp
+++ b/modules/gltf/structures/gltf_mesh.cpp
@@ -30,7 +30,7 @@
 
 #include "gltf_mesh.h"
 
-#include "scene/resources/importer_mesh.h"
+#include "scene/resources/3d/importer_mesh.h"
 
 void GLTFMesh::_bind_methods() {
 	ClassDB::bind_method(D_METHOD("get_original_name"), &GLTFMesh::get_original_name);
diff --git a/modules/gltf/structures/gltf_mesh.h b/modules/gltf/structures/gltf_mesh.h
index c33e39df847d..6983efeb2ae8 100644
--- a/modules/gltf/structures/gltf_mesh.h
+++ b/modules/gltf/structures/gltf_mesh.h
@@ -33,7 +33,7 @@
 
 #include "../gltf_defines.h"
 
-#include "scene/resources/importer_mesh.h"
+#include "scene/resources/3d/importer_mesh.h"
 
 class GLTFMesh : public Resource {
 	GDCLASS(GLTFMesh, Resource);
diff --git a/modules/gltf/structures/gltf_skin.cpp b/modules/gltf/structures/gltf_skin.cpp
index 8097c7b3d04f..18aa90a628cc 100644
--- a/modules/gltf/structures/gltf_skin.cpp
+++ b/modules/gltf/structures/gltf_skin.cpp
@@ -33,7 +33,7 @@
 #include "../gltf_template_convert.h"
 
 #include "core/variant/typed_array.h"
-#include "scene/resources/skin.h"
+#include "scene/resources/3d/skin.h"
 
 void GLTFSkin::_bind_methods() {
 	ClassDB::bind_method(D_METHOD("get_skin_root"), &GLTFSkin::get_skin_root);
diff --git a/modules/gltf/structures/gltf_skin.h b/modules/gltf/structures/gltf_skin.h
index ce863da45ddc..4649a918e3f6 100644
--- a/modules/gltf/structures/gltf_skin.h
+++ b/modules/gltf/structures/gltf_skin.h
@@ -34,7 +34,7 @@
 #include "../gltf_defines.h"
 
 #include "core/io/resource.h"
-#include "scene/resources/skin.h"
+#include "scene/resources/3d/skin.h"
 
 template <typename T>
 class TypedArray;
diff --git a/modules/gridmap/grid_map.cpp b/modules/gridmap/grid_map.cpp
index e3475b39592d..fb449a67f856 100644
--- a/modules/gridmap/grid_map.cpp
+++ b/modules/gridmap/grid_map.cpp
@@ -33,9 +33,9 @@
 #include "core/core_string_names.h"
 #include "core/io/marshalls.h"
 #include "scene/3d/light_3d.h"
-#include "scene/resources/mesh_library.h"
+#include "scene/resources/3d/mesh_library.h"
+#include "scene/resources/3d/primitive_meshes.h"
 #include "scene/resources/physics_material.h"
-#include "scene/resources/primitive_meshes.h"
 #include "scene/resources/surface_tool.h"
 #include "scene/scene_string_names.h"
 #include "servers/navigation_server_3d.h"
diff --git a/modules/gridmap/grid_map.h b/modules/gridmap/grid_map.h
index 348ac5194cb2..7398a540ded6 100644
--- a/modules/gridmap/grid_map.h
+++ b/modules/gridmap/grid_map.h
@@ -32,7 +32,7 @@
 #define GRID_MAP_H
 
 #include "scene/3d/node_3d.h"
-#include "scene/resources/mesh_library.h"
+#include "scene/resources/3d/mesh_library.h"
 #include "scene/resources/multimesh.h"
 
 //heh heh, godotsphir!! this shares no code and the design is completely different with previous projects i've done..
diff --git a/modules/navigation/2d/nav_mesh_generator_2d.cpp b/modules/navigation/2d/nav_mesh_generator_2d.cpp
index 836dee817875..9fdfb208423c 100644
--- a/modules/navigation/2d/nav_mesh_generator_2d.cpp
+++ b/modules/navigation/2d/nav_mesh_generator_2d.cpp
@@ -38,13 +38,13 @@
 #include "scene/2d/physics_body_2d.h"
 #include "scene/2d/polygon_2d.h"
 #include "scene/2d/tile_map.h"
-#include "scene/resources/capsule_shape_2d.h"
-#include "scene/resources/circle_shape_2d.h"
-#include "scene/resources/concave_polygon_shape_2d.h"
-#include "scene/resources/convex_polygon_shape_2d.h"
+#include "scene/resources/2d/capsule_shape_2d.h"
+#include "scene/resources/2d/circle_shape_2d.h"
+#include "scene/resources/2d/concave_polygon_shape_2d.h"
+#include "scene/resources/2d/convex_polygon_shape_2d.h"
+#include "scene/resources/2d/rectangle_shape_2d.h"
 #include "scene/resources/navigation_mesh_source_geometry_data_2d.h"
 #include "scene/resources/navigation_polygon.h"
-#include "scene/resources/rectangle_shape_2d.h"
 
 #include "thirdparty/clipper2/include/clipper2/clipper.h"
 #include "thirdparty/misc/polypartition.h"
diff --git a/modules/navigation/3d/nav_mesh_generator_3d.cpp b/modules/navigation/3d/nav_mesh_generator_3d.cpp
index 95854f29e7b5..4cd4f60edc70 100644
--- a/modules/navigation/3d/nav_mesh_generator_3d.cpp
+++ b/modules/navigation/3d/nav_mesh_generator_3d.cpp
@@ -38,18 +38,18 @@
 #include "scene/3d/mesh_instance_3d.h"
 #include "scene/3d/multimesh_instance_3d.h"
 #include "scene/3d/physics_body_3d.h"
-#include "scene/resources/box_shape_3d.h"
-#include "scene/resources/capsule_shape_3d.h"
-#include "scene/resources/concave_polygon_shape_3d.h"
-#include "scene/resources/convex_polygon_shape_3d.h"
-#include "scene/resources/cylinder_shape_3d.h"
-#include "scene/resources/height_map_shape_3d.h"
+#include "scene/resources/3d/box_shape_3d.h"
+#include "scene/resources/3d/capsule_shape_3d.h"
+#include "scene/resources/3d/concave_polygon_shape_3d.h"
+#include "scene/resources/3d/convex_polygon_shape_3d.h"
+#include "scene/resources/3d/cylinder_shape_3d.h"
+#include "scene/resources/3d/height_map_shape_3d.h"
+#include "scene/resources/3d/primitive_meshes.h"
+#include "scene/resources/3d/shape_3d.h"
+#include "scene/resources/3d/sphere_shape_3d.h"
+#include "scene/resources/3d/world_boundary_shape_3d.h"
 #include "scene/resources/navigation_mesh.h"
 #include "scene/resources/navigation_mesh_source_geometry_data_3d.h"
-#include "scene/resources/primitive_meshes.h"
-#include "scene/resources/shape_3d.h"
-#include "scene/resources/sphere_shape_3d.h"
-#include "scene/resources/world_boundary_shape_3d.h"
 
 #include "modules/modules_enabled.gen.h" // For csg, gridmap.
 
diff --git a/scene/2d/collision_object_2d.h b/scene/2d/collision_object_2d.h
index 780793f289bc..2c8534665ca3 100644
--- a/scene/2d/collision_object_2d.h
+++ b/scene/2d/collision_object_2d.h
@@ -33,7 +33,7 @@
 
 #include "scene/2d/node_2d.h"
 #include "scene/main/viewport.h"
-#include "scene/resources/shape_2d.h"
+#include "scene/resources/2d/shape_2d.h"
 #include "servers/physics_server_2d.h"
 
 class CollisionObject2D : public Node2D {
diff --git a/scene/2d/collision_polygon_2d.cpp b/scene/2d/collision_polygon_2d.cpp
index d2f71eca9d61..3bc5bce8f0d9 100644
--- a/scene/2d/collision_polygon_2d.cpp
+++ b/scene/2d/collision_polygon_2d.cpp
@@ -33,8 +33,8 @@
 #include "collision_object_2d.h"
 #include "core/math/geometry_2d.h"
 #include "scene/2d/area_2d.h"
-#include "scene/resources/concave_polygon_shape_2d.h"
-#include "scene/resources/convex_polygon_shape_2d.h"
+#include "scene/resources/2d/concave_polygon_shape_2d.h"
+#include "scene/resources/2d/convex_polygon_shape_2d.h"
 
 #include "thirdparty/misc/polypartition.h"
 
diff --git a/scene/2d/collision_shape_2d.cpp b/scene/2d/collision_shape_2d.cpp
index ee413c7bc2db..5539e4913540 100644
--- a/scene/2d/collision_shape_2d.cpp
+++ b/scene/2d/collision_shape_2d.cpp
@@ -32,8 +32,8 @@
 
 #include "collision_object_2d.h"
 #include "scene/2d/area_2d.h"
-#include "scene/resources/concave_polygon_shape_2d.h"
-#include "scene/resources/convex_polygon_shape_2d.h"
+#include "scene/resources/2d/concave_polygon_shape_2d.h"
+#include "scene/resources/2d/convex_polygon_shape_2d.h"
 
 void CollisionShape2D::_shape_changed() {
 	queue_redraw();
diff --git a/scene/2d/collision_shape_2d.h b/scene/2d/collision_shape_2d.h
index 3e13dd698c19..65436f1539eb 100644
--- a/scene/2d/collision_shape_2d.h
+++ b/scene/2d/collision_shape_2d.h
@@ -32,7 +32,7 @@
 #define COLLISION_SHAPE_2D_H
 
 #include "scene/2d/node_2d.h"
-#include "scene/resources/shape_2d.h"
+#include "scene/resources/2d/shape_2d.h"
 
 class CollisionObject2D;
 
diff --git a/scene/2d/shape_cast_2d.cpp b/scene/2d/shape_cast_2d.cpp
index 90d80d754906..38e3b3180b84 100644
--- a/scene/2d/shape_cast_2d.cpp
+++ b/scene/2d/shape_cast_2d.cpp
@@ -33,7 +33,7 @@
 #include "core/config/engine.h"
 #include "scene/2d/collision_object_2d.h"
 #include "scene/2d/physics_body_2d.h"
-#include "scene/resources/circle_shape_2d.h"
+#include "scene/resources/2d/circle_shape_2d.h"
 #include "servers/physics_2d/godot_physics_server_2d.h"
 
 void ShapeCast2D::set_target_position(const Vector2 &p_point) {
diff --git a/scene/2d/shape_cast_2d.h b/scene/2d/shape_cast_2d.h
index a577c351fd7a..6b8fd5b798e3 100644
--- a/scene/2d/shape_cast_2d.h
+++ b/scene/2d/shape_cast_2d.h
@@ -32,7 +32,7 @@
 #define SHAPE_CAST_2D_H
 
 #include "scene/2d/node_2d.h"
-#include "scene/resources/shape_2d.h"
+#include "scene/resources/2d/shape_2d.h"
 #include "scene/resources/world_2d.h"
 
 class CollisionObject2D;
diff --git a/scene/2d/skeleton_2d.h b/scene/2d/skeleton_2d.h
index 6a36a3155293..ad6a47bf431c 100644
--- a/scene/2d/skeleton_2d.h
+++ b/scene/2d/skeleton_2d.h
@@ -32,7 +32,7 @@
 #define SKELETON_2D_H
 
 #include "scene/2d/node_2d.h"
-#include "scene/resources/skeleton_modification_2d.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d.h"
 
 class Skeleton2D;
 
diff --git a/scene/2d/tile_map.h b/scene/2d/tile_map.h
index 16750625e5c5..c9844f29af76 100644
--- a/scene/2d/tile_map.h
+++ b/scene/2d/tile_map.h
@@ -32,7 +32,7 @@
 #define TILE_MAP_H
 
 #include "scene/2d/tile_map_layer_group.h"
-#include "scene/resources/tile_set.h"
+#include "scene/resources/2d/tile_set.h"
 
 class Control;
 class TileMapLayer;
diff --git a/scene/2d/tile_map_layer.h b/scene/2d/tile_map_layer.h
index ac03f3155f90..5a0c51d7e5f8 100644
--- a/scene/2d/tile_map_layer.h
+++ b/scene/2d/tile_map_layer.h
@@ -32,7 +32,7 @@
 #define TILE_MAP_LAYER_H
 
 #include "scene/2d/tile_map.h"
-#include "scene/resources/tile_set.h"
+#include "scene/resources/2d/tile_set.h"
 
 class TileSetAtlasSource;
 
diff --git a/scene/2d/tile_map_layer_group.cpp b/scene/2d/tile_map_layer_group.cpp
index ac0de380a3bf..c59653447451 100644
--- a/scene/2d/tile_map_layer_group.cpp
+++ b/scene/2d/tile_map_layer_group.cpp
@@ -32,7 +32,7 @@
 
 #include "core/core_string_names.h"
 #include "scene/2d/tile_map_layer.h"
-#include "scene/resources/tile_set.h"
+#include "scene/resources/2d/tile_set.h"
 
 #ifdef TOOLS_ENABLED
 
diff --git a/scene/2d/touch_screen_button.h b/scene/2d/touch_screen_button.h
index c7dc0a323ed1..4467604e2b2a 100644
--- a/scene/2d/touch_screen_button.h
+++ b/scene/2d/touch_screen_button.h
@@ -32,8 +32,8 @@
 #define TOUCH_SCREEN_BUTTON_H
 
 #include "scene/2d/node_2d.h"
+#include "scene/resources/2d/rectangle_shape_2d.h"
 #include "scene/resources/bit_map.h"
-#include "scene/resources/rectangle_shape_2d.h"
 #include "scene/resources/texture.h"
 
 class TouchScreenButton : public Node2D {
diff --git a/scene/3d/collision_object_3d.cpp b/scene/3d/collision_object_3d.cpp
index 0cfe0f8cb739..bbd2ef2fb83b 100644
--- a/scene/3d/collision_object_3d.cpp
+++ b/scene/3d/collision_object_3d.cpp
@@ -30,7 +30,7 @@
 
 #include "collision_object_3d.h"
 
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 #include "scene/scene_string_names.h"
 
 void CollisionObject3D::_notification(int p_what) {
diff --git a/scene/3d/collision_polygon_3d.cpp b/scene/3d/collision_polygon_3d.cpp
index 9c1a7181aa50..abde05778d77 100644
--- a/scene/3d/collision_polygon_3d.cpp
+++ b/scene/3d/collision_polygon_3d.cpp
@@ -32,7 +32,7 @@
 
 #include "collision_object_3d.h"
 #include "core/math/geometry_2d.h"
-#include "scene/resources/convex_polygon_shape_3d.h"
+#include "scene/resources/3d/convex_polygon_shape_3d.h"
 
 void CollisionPolygon3D::_build_polygon() {
 	if (!collision_object) {
diff --git a/scene/3d/collision_polygon_3d.h b/scene/3d/collision_polygon_3d.h
index 61290a7947ff..fe4cf40ee310 100644
--- a/scene/3d/collision_polygon_3d.h
+++ b/scene/3d/collision_polygon_3d.h
@@ -32,7 +32,7 @@
 #define COLLISION_POLYGON_3D_H
 
 #include "scene/3d/node_3d.h"
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 class CollisionObject3D;
 class CollisionPolygon3D : public Node3D {
diff --git a/scene/3d/collision_shape_3d.cpp b/scene/3d/collision_shape_3d.cpp
index 61941a0e5337..08fc62ae4fd2 100644
--- a/scene/3d/collision_shape_3d.cpp
+++ b/scene/3d/collision_shape_3d.cpp
@@ -32,9 +32,9 @@
 
 #include "mesh_instance_3d.h"
 #include "physics_body_3d.h"
-#include "scene/resources/concave_polygon_shape_3d.h"
-#include "scene/resources/convex_polygon_shape_3d.h"
-#include "scene/resources/world_boundary_shape_3d.h"
+#include "scene/resources/3d/concave_polygon_shape_3d.h"
+#include "scene/resources/3d/convex_polygon_shape_3d.h"
+#include "scene/resources/3d/world_boundary_shape_3d.h"
 #include "vehicle_body_3d.h"
 
 void CollisionShape3D::make_convex_from_siblings() {
diff --git a/scene/3d/collision_shape_3d.h b/scene/3d/collision_shape_3d.h
index bc0e70f8ac0b..15f6ef73cbf1 100644
--- a/scene/3d/collision_shape_3d.h
+++ b/scene/3d/collision_shape_3d.h
@@ -32,7 +32,7 @@
 #define COLLISION_SHAPE_3D_H
 
 #include "scene/3d/node_3d.h"
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 class CollisionObject3D;
 class CollisionShape3D : public Node3D {
diff --git a/scene/3d/gpu_particles_3d.h b/scene/3d/gpu_particles_3d.h
index 0c9f2c13783f..b5aee6fe3477 100644
--- a/scene/3d/gpu_particles_3d.h
+++ b/scene/3d/gpu_particles_3d.h
@@ -32,7 +32,7 @@
 #define GPU_PARTICLES_3D_H
 
 #include "scene/3d/visual_instance_3d.h"
-#include "scene/resources/skin.h"
+#include "scene/resources/3d/skin.h"
 
 class GPUParticles3D : public GeometryInstance3D {
 private:
diff --git a/scene/3d/importer_mesh_instance_3d.cpp b/scene/3d/importer_mesh_instance_3d.cpp
index 2216b3818d52..ad44c9e56a8a 100644
--- a/scene/3d/importer_mesh_instance_3d.cpp
+++ b/scene/3d/importer_mesh_instance_3d.cpp
@@ -30,7 +30,7 @@
 
 #include "importer_mesh_instance_3d.h"
 
-#include "scene/resources/importer_mesh.h"
+#include "scene/resources/3d/importer_mesh.h"
 
 void ImporterMeshInstance3D::set_mesh(const Ref<ImporterMesh> &p_mesh) {
 	mesh = p_mesh;
diff --git a/scene/3d/importer_mesh_instance_3d.h b/scene/3d/importer_mesh_instance_3d.h
index d48721383f92..fbd95d4b6807 100644
--- a/scene/3d/importer_mesh_instance_3d.h
+++ b/scene/3d/importer_mesh_instance_3d.h
@@ -33,8 +33,8 @@
 
 #include "scene/3d/node_3d.h"
 #include "scene/3d/visual_instance_3d.h"
+#include "scene/resources/3d/skin.h"
 #include "scene/resources/immediate_mesh.h"
-#include "scene/resources/skin.h"
 
 class ImporterMesh;
 
diff --git a/scene/3d/mesh_instance_3d.cpp b/scene/3d/mesh_instance_3d.cpp
index 35baf81e8959..eeb41573f704 100644
--- a/scene/3d/mesh_instance_3d.cpp
+++ b/scene/3d/mesh_instance_3d.cpp
@@ -32,8 +32,8 @@
 
 #include "collision_shape_3d.h"
 #include "physics_body_3d.h"
-#include "scene/resources/concave_polygon_shape_3d.h"
-#include "scene/resources/convex_polygon_shape_3d.h"
+#include "scene/resources/3d/concave_polygon_shape_3d.h"
+#include "scene/resources/3d/convex_polygon_shape_3d.h"
 
 bool MeshInstance3D::_set(const StringName &p_name, const Variant &p_value) {
 	//this is not _too_ bad performance wise, really. it only arrives here if the property was not set anywhere else.
diff --git a/scene/3d/node_3d.h b/scene/3d/node_3d.h
index 20030210c648..7f8c3e6e6863 100644
--- a/scene/3d/node_3d.h
+++ b/scene/3d/node_3d.h
@@ -32,7 +32,7 @@
 #define NODE_3D_H
 
 #include "scene/main/node.h"
-#include "scene/resources/world_3d.h"
+#include "scene/resources/3d/world_3d.h"
 
 class Node3DGizmo : public RefCounted {
 	GDCLASS(Node3DGizmo, RefCounted);
diff --git a/scene/3d/occluder_instance_3d.cpp b/scene/3d/occluder_instance_3d.cpp
index a76488e479ec..8d995a87850e 100644
--- a/scene/3d/occluder_instance_3d.cpp
+++ b/scene/3d/occluder_instance_3d.cpp
@@ -36,7 +36,7 @@
 #include "core/math/triangulate.h"
 #include "scene/3d/importer_mesh_instance_3d.h"
 #include "scene/3d/mesh_instance_3d.h"
-#include "scene/resources/importer_mesh.h"
+#include "scene/resources/3d/importer_mesh.h"
 #include "scene/resources/surface_tool.h"
 
 #ifdef TOOLS_ENABLED
diff --git a/scene/3d/shape_cast_3d.cpp b/scene/3d/shape_cast_3d.cpp
index 4d9eeada06cb..2da5f52928f2 100644
--- a/scene/3d/shape_cast_3d.cpp
+++ b/scene/3d/shape_cast_3d.cpp
@@ -32,7 +32,7 @@
 
 #include "scene/3d/collision_object_3d.h"
 #include "scene/3d/mesh_instance_3d.h"
-#include "scene/resources/concave_polygon_shape_3d.h"
+#include "scene/resources/3d/concave_polygon_shape_3d.h"
 
 void ShapeCast3D::_notification(int p_what) {
 	switch (p_what) {
diff --git a/scene/3d/shape_cast_3d.h b/scene/3d/shape_cast_3d.h
index 043e35090f32..9052db904697 100644
--- a/scene/3d/shape_cast_3d.h
+++ b/scene/3d/shape_cast_3d.h
@@ -32,7 +32,7 @@
 #define SHAPE_CAST_3D_H
 
 #include "scene/3d/node_3d.h"
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 class CollisionObject3D;
 
diff --git a/scene/3d/skeleton_3d.h b/scene/3d/skeleton_3d.h
index 458bbfb979ca..979e2e52b72e 100644
--- a/scene/3d/skeleton_3d.h
+++ b/scene/3d/skeleton_3d.h
@@ -32,7 +32,7 @@
 #define SKELETON_3D_H
 
 #include "scene/3d/node_3d.h"
-#include "scene/resources/skin.h"
+#include "scene/resources/3d/skin.h"
 
 typedef int BoneId;
 
diff --git a/scene/3d/spring_arm_3d.cpp b/scene/3d/spring_arm_3d.cpp
index 9151fa95935b..8d2f10310c77 100644
--- a/scene/3d/spring_arm_3d.cpp
+++ b/scene/3d/spring_arm_3d.cpp
@@ -31,7 +31,7 @@
 #include "spring_arm_3d.h"
 
 #include "scene/3d/camera_3d.h"
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 void SpringArm3D::_notification(int p_what) {
 	switch (p_what) {
diff --git a/scene/main/scene_tree.cpp b/scene/main/scene_tree.cpp
index a29311af4336..8d0bad6942d6 100644
--- a/scene/main/scene_tree.cpp
+++ b/scene/main/scene_tree.cpp
@@ -55,12 +55,12 @@
 #include "scene/resources/mesh.h"
 #include "scene/resources/packed_scene.h"
 #include "scene/resources/world_2d.h"
-#include "scene/resources/world_3d.h"
 #include "scene/scene_string_names.h"
 #include "servers/display_server.h"
 #include "servers/navigation_server_3d.h"
 #include "servers/physics_server_2d.h"
 #ifndef _3D_DISABLED
+#include "scene/resources/3d/world_3d.h"
 #include "servers/physics_server_3d.h"
 #endif // _3D_DISABLED
 #include "window.h"
diff --git a/scene/register_scene_types.cpp b/scene/register_scene_types.cpp
index 035c6c0695b9..b156cd042223 100644
--- a/scene/register_scene_types.cpp
+++ b/scene/register_scene_types.cpp
@@ -139,6 +139,25 @@
 #include "scene/main/timer.h"
 #include "scene/main/viewport.h"
 #include "scene/main/window.h"
+#include "scene/resources/2d/capsule_shape_2d.h"
+#include "scene/resources/2d/circle_shape_2d.h"
+#include "scene/resources/2d/concave_polygon_shape_2d.h"
+#include "scene/resources/2d/convex_polygon_shape_2d.h"
+#include "scene/resources/2d/polygon_path_finder.h"
+#include "scene/resources/2d/rectangle_shape_2d.h"
+#include "scene/resources/2d/segment_shape_2d.h"
+#include "scene/resources/2d/separation_ray_shape_2d.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d_ccdik.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d_fabrik.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d_jiggle.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d_lookat.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d_physicalbones.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d_stackholder.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d_twoboneik.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_stack_2d.h"
+#include "scene/resources/2d/tile_set.h"
+#include "scene/resources/2d/world_boundary_shape_2d.h"
 #include "scene/resources/animated_texture.h"
 #include "scene/resources/animation_library.h"
 #include "scene/resources/atlas_texture.h"
@@ -148,12 +167,8 @@
 #include "scene/resources/bone_map.h"
 #include "scene/resources/camera_attributes.h"
 #include "scene/resources/camera_texture.h"
-#include "scene/resources/capsule_shape_2d.h"
-#include "scene/resources/circle_shape_2d.h"
 #include "scene/resources/compositor.h"
 #include "scene/resources/compressed_texture.h"
-#include "scene/resources/concave_polygon_shape_2d.h"
-#include "scene/resources/convex_polygon_shape_2d.h"
 #include "scene/resources/curve_texture.h"
 #include "scene/resources/environment.h"
 #include "scene/resources/font.h"
@@ -174,25 +189,11 @@
 #include "scene/resources/particle_process_material.h"
 #include "scene/resources/physics_material.h"
 #include "scene/resources/placeholder_textures.h"
-#include "scene/resources/polygon_path_finder.h"
 #include "scene/resources/portable_compressed_texture.h"
-#include "scene/resources/rectangle_shape_2d.h"
 #include "scene/resources/resource_format_text.h"
-#include "scene/resources/segment_shape_2d.h"
-#include "scene/resources/separation_ray_shape_2d.h"
 #include "scene/resources/shader_include.h"
-#include "scene/resources/skeleton_modification_2d.h"
-#include "scene/resources/skeleton_modification_2d_ccdik.h"
-#include "scene/resources/skeleton_modification_2d_fabrik.h"
-#include "scene/resources/skeleton_modification_2d_jiggle.h"
-#include "scene/resources/skeleton_modification_2d_lookat.h"
-#include "scene/resources/skeleton_modification_2d_physicalbones.h"
-#include "scene/resources/skeleton_modification_2d_stackholder.h"
-#include "scene/resources/skeleton_modification_2d_twoboneik.h"
-#include "scene/resources/skeleton_modification_stack_2d.h"
 #include "scene/resources/skeleton_profile.h"
 #include "scene/resources/sky.h"
-#include "scene/resources/sky_material.h"
 #include "scene/resources/style_box.h"
 #include "scene/resources/style_box_flat.h"
 #include "scene/resources/style_box_line.h"
@@ -205,14 +206,12 @@
 #include "scene/resources/texture.h"
 #include "scene/resources/texture_rd.h"
 #include "scene/resources/theme.h"
-#include "scene/resources/tile_set.h"
 #include "scene/resources/video_stream.h"
 #include "scene/resources/visual_shader.h"
 #include "scene/resources/visual_shader_nodes.h"
 #include "scene/resources/visual_shader_particle_nodes.h"
 #include "scene/resources/visual_shader_sdf_nodes.h"
 #include "scene/resources/world_2d.h"
-#include "scene/resources/world_boundary_shape_2d.h"
 #include "scene/scene_string_names.h"
 #include "scene/theme/theme_db.h"
 
@@ -265,20 +264,21 @@
 #include "scene/3d/xr_hand_modifier_3d.h"
 #include "scene/3d/xr_nodes.h"
 #include "scene/animation/root_motion_view.h"
-#include "scene/resources/box_shape_3d.h"
-#include "scene/resources/capsule_shape_3d.h"
-#include "scene/resources/concave_polygon_shape_3d.h"
-#include "scene/resources/convex_polygon_shape_3d.h"
-#include "scene/resources/cylinder_shape_3d.h"
-#include "scene/resources/fog_material.h"
-#include "scene/resources/height_map_shape_3d.h"
-#include "scene/resources/importer_mesh.h"
-#include "scene/resources/mesh_library.h"
-#include "scene/resources/primitive_meshes.h"
-#include "scene/resources/separation_ray_shape_3d.h"
-#include "scene/resources/sphere_shape_3d.h"
-#include "scene/resources/world_3d.h"
-#include "scene/resources/world_boundary_shape_3d.h"
+#include "scene/resources/3d/box_shape_3d.h"
+#include "scene/resources/3d/capsule_shape_3d.h"
+#include "scene/resources/3d/concave_polygon_shape_3d.h"
+#include "scene/resources/3d/convex_polygon_shape_3d.h"
+#include "scene/resources/3d/cylinder_shape_3d.h"
+#include "scene/resources/3d/fog_material.h"
+#include "scene/resources/3d/height_map_shape_3d.h"
+#include "scene/resources/3d/importer_mesh.h"
+#include "scene/resources/3d/mesh_library.h"
+#include "scene/resources/3d/primitive_meshes.h"
+#include "scene/resources/3d/separation_ray_shape_3d.h"
+#include "scene/resources/3d/sky_material.h"
+#include "scene/resources/3d/sphere_shape_3d.h"
+#include "scene/resources/3d/world_3d.h"
+#include "scene/resources/3d/world_boundary_shape_3d.h"
 #endif // _3D_DISABLED
 
 static Ref<ResourceFormatSaverText> resource_saver_text;
diff --git a/scene/resources/2d/SCsub b/scene/resources/2d/SCsub
new file mode 100644
index 000000000000..fdf20e0bde3f
--- /dev/null
+++ b/scene/resources/2d/SCsub
@@ -0,0 +1,6 @@
+#!/usr/bin/env python
+
+Import("env")
+
+env.add_source_files(env.scene_sources, "*.cpp")
+env.add_source_files(env.scene_sources, "skeleton/*.cpp")
diff --git a/scene/resources/capsule_shape_2d.cpp b/scene/resources/2d/capsule_shape_2d.cpp
similarity index 100%
rename from scene/resources/capsule_shape_2d.cpp
rename to scene/resources/2d/capsule_shape_2d.cpp
diff --git a/scene/resources/capsule_shape_2d.h b/scene/resources/2d/capsule_shape_2d.h
similarity index 98%
rename from scene/resources/capsule_shape_2d.h
rename to scene/resources/2d/capsule_shape_2d.h
index 4912466f9687..cfd3fc6b2677 100644
--- a/scene/resources/capsule_shape_2d.h
+++ b/scene/resources/2d/capsule_shape_2d.h
@@ -31,7 +31,7 @@
 #ifndef CAPSULE_SHAPE_2D_H
 #define CAPSULE_SHAPE_2D_H
 
-#include "scene/resources/shape_2d.h"
+#include "scene/resources/2d/shape_2d.h"
 
 class CapsuleShape2D : public Shape2D {
 	GDCLASS(CapsuleShape2D, Shape2D);
diff --git a/scene/resources/circle_shape_2d.cpp b/scene/resources/2d/circle_shape_2d.cpp
similarity index 100%
rename from scene/resources/circle_shape_2d.cpp
rename to scene/resources/2d/circle_shape_2d.cpp
diff --git a/scene/resources/circle_shape_2d.h b/scene/resources/2d/circle_shape_2d.h
similarity index 98%
rename from scene/resources/circle_shape_2d.h
rename to scene/resources/2d/circle_shape_2d.h
index ab0bff4ca834..203a8240ebba 100644
--- a/scene/resources/circle_shape_2d.h
+++ b/scene/resources/2d/circle_shape_2d.h
@@ -31,7 +31,7 @@
 #ifndef CIRCLE_SHAPE_2D_H
 #define CIRCLE_SHAPE_2D_H
 
-#include "scene/resources/shape_2d.h"
+#include "scene/resources/2d/shape_2d.h"
 
 class CircleShape2D : public Shape2D {
 	GDCLASS(CircleShape2D, Shape2D);
diff --git a/scene/resources/concave_polygon_shape_2d.cpp b/scene/resources/2d/concave_polygon_shape_2d.cpp
similarity index 100%
rename from scene/resources/concave_polygon_shape_2d.cpp
rename to scene/resources/2d/concave_polygon_shape_2d.cpp
diff --git a/scene/resources/concave_polygon_shape_2d.h b/scene/resources/2d/concave_polygon_shape_2d.h
similarity index 98%
rename from scene/resources/concave_polygon_shape_2d.h
rename to scene/resources/2d/concave_polygon_shape_2d.h
index 7b3540a20d96..8b0b77acaa2d 100644
--- a/scene/resources/concave_polygon_shape_2d.h
+++ b/scene/resources/2d/concave_polygon_shape_2d.h
@@ -31,7 +31,7 @@
 #ifndef CONCAVE_POLYGON_SHAPE_2D_H
 #define CONCAVE_POLYGON_SHAPE_2D_H
 
-#include "scene/resources/shape_2d.h"
+#include "scene/resources/2d/shape_2d.h"
 
 class ConcavePolygonShape2D : public Shape2D {
 	GDCLASS(ConcavePolygonShape2D, Shape2D);
diff --git a/scene/resources/convex_polygon_shape_2d.cpp b/scene/resources/2d/convex_polygon_shape_2d.cpp
similarity index 100%
rename from scene/resources/convex_polygon_shape_2d.cpp
rename to scene/resources/2d/convex_polygon_shape_2d.cpp
diff --git a/scene/resources/convex_polygon_shape_2d.h b/scene/resources/2d/convex_polygon_shape_2d.h
similarity index 98%
rename from scene/resources/convex_polygon_shape_2d.h
rename to scene/resources/2d/convex_polygon_shape_2d.h
index 71b98a0d2593..2e448f113356 100644
--- a/scene/resources/convex_polygon_shape_2d.h
+++ b/scene/resources/2d/convex_polygon_shape_2d.h
@@ -31,7 +31,7 @@
 #ifndef CONVEX_POLYGON_SHAPE_2D_H
 #define CONVEX_POLYGON_SHAPE_2D_H
 
-#include "scene/resources/shape_2d.h"
+#include "scene/resources/2d/shape_2d.h"
 
 class ConvexPolygonShape2D : public Shape2D {
 	GDCLASS(ConvexPolygonShape2D, Shape2D);
diff --git a/scene/resources/polygon_path_finder.cpp b/scene/resources/2d/polygon_path_finder.cpp
similarity index 100%
rename from scene/resources/polygon_path_finder.cpp
rename to scene/resources/2d/polygon_path_finder.cpp
diff --git a/scene/resources/polygon_path_finder.h b/scene/resources/2d/polygon_path_finder.h
similarity index 100%
rename from scene/resources/polygon_path_finder.h
rename to scene/resources/2d/polygon_path_finder.h
diff --git a/scene/resources/rectangle_shape_2d.cpp b/scene/resources/2d/rectangle_shape_2d.cpp
similarity index 100%
rename from scene/resources/rectangle_shape_2d.cpp
rename to scene/resources/2d/rectangle_shape_2d.cpp
diff --git a/scene/resources/rectangle_shape_2d.h b/scene/resources/2d/rectangle_shape_2d.h
similarity index 98%
rename from scene/resources/rectangle_shape_2d.h
rename to scene/resources/2d/rectangle_shape_2d.h
index f990b5967e66..80fbc51b5c65 100644
--- a/scene/resources/rectangle_shape_2d.h
+++ b/scene/resources/2d/rectangle_shape_2d.h
@@ -31,7 +31,7 @@
 #ifndef RECTANGLE_SHAPE_2D_H
 #define RECTANGLE_SHAPE_2D_H
 
-#include "scene/resources/shape_2d.h"
+#include "scene/resources/2d/shape_2d.h"
 
 class RectangleShape2D : public Shape2D {
 	GDCLASS(RectangleShape2D, Shape2D);
diff --git a/scene/resources/segment_shape_2d.cpp b/scene/resources/2d/segment_shape_2d.cpp
similarity index 100%
rename from scene/resources/segment_shape_2d.cpp
rename to scene/resources/2d/segment_shape_2d.cpp
diff --git a/scene/resources/segment_shape_2d.h b/scene/resources/2d/segment_shape_2d.h
similarity index 98%
rename from scene/resources/segment_shape_2d.h
rename to scene/resources/2d/segment_shape_2d.h
index 4bec192fd2a1..ad2ece883d3e 100644
--- a/scene/resources/segment_shape_2d.h
+++ b/scene/resources/2d/segment_shape_2d.h
@@ -31,7 +31,7 @@
 #ifndef SEGMENT_SHAPE_2D_H
 #define SEGMENT_SHAPE_2D_H
 
-#include "scene/resources/shape_2d.h"
+#include "scene/resources/2d/shape_2d.h"
 
 class SegmentShape2D : public Shape2D {
 	GDCLASS(SegmentShape2D, Shape2D);
diff --git a/scene/resources/separation_ray_shape_2d.cpp b/scene/resources/2d/separation_ray_shape_2d.cpp
similarity index 100%
rename from scene/resources/separation_ray_shape_2d.cpp
rename to scene/resources/2d/separation_ray_shape_2d.cpp
diff --git a/scene/resources/separation_ray_shape_2d.h b/scene/resources/2d/separation_ray_shape_2d.h
similarity index 98%
rename from scene/resources/separation_ray_shape_2d.h
rename to scene/resources/2d/separation_ray_shape_2d.h
index 8eab73d9c55b..0359b41b6e91 100644
--- a/scene/resources/separation_ray_shape_2d.h
+++ b/scene/resources/2d/separation_ray_shape_2d.h
@@ -31,7 +31,7 @@
 #ifndef SEPARATION_RAY_SHAPE_2D_H
 #define SEPARATION_RAY_SHAPE_2D_H
 
-#include "scene/resources/shape_2d.h"
+#include "scene/resources/2d/shape_2d.h"
 
 class SeparationRayShape2D : public Shape2D {
 	GDCLASS(SeparationRayShape2D, Shape2D);
diff --git a/scene/resources/shape_2d.cpp b/scene/resources/2d/shape_2d.cpp
similarity index 100%
rename from scene/resources/shape_2d.cpp
rename to scene/resources/2d/shape_2d.cpp
diff --git a/scene/resources/shape_2d.h b/scene/resources/2d/shape_2d.h
similarity index 100%
rename from scene/resources/shape_2d.h
rename to scene/resources/2d/shape_2d.h
diff --git a/scene/resources/skeleton_modification_2d.cpp b/scene/resources/2d/skeleton/skeleton_modification_2d.cpp
similarity index 100%
rename from scene/resources/skeleton_modification_2d.cpp
rename to scene/resources/2d/skeleton/skeleton_modification_2d.cpp
diff --git a/scene/resources/skeleton_modification_2d.h b/scene/resources/2d/skeleton/skeleton_modification_2d.h
similarity index 98%
rename from scene/resources/skeleton_modification_2d.h
rename to scene/resources/2d/skeleton/skeleton_modification_2d.h
index c00c3c8dc24c..413b860a9909 100644
--- a/scene/resources/skeleton_modification_2d.h
+++ b/scene/resources/2d/skeleton/skeleton_modification_2d.h
@@ -32,7 +32,7 @@
 #define SKELETON_MODIFICATION_2D_H
 
 #include "scene/2d/skeleton_2d.h"
-#include "scene/resources/skeleton_modification_stack_2d.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_stack_2d.h"
 
 ///////////////////////////////////////
 // SkeletonModification2D
diff --git a/scene/resources/skeleton_modification_2d_ccdik.cpp b/scene/resources/2d/skeleton/skeleton_modification_2d_ccdik.cpp
similarity index 100%
rename from scene/resources/skeleton_modification_2d_ccdik.cpp
rename to scene/resources/2d/skeleton/skeleton_modification_2d_ccdik.cpp
diff --git a/scene/resources/skeleton_modification_2d_ccdik.h b/scene/resources/2d/skeleton/skeleton_modification_2d_ccdik.h
similarity index 98%
rename from scene/resources/skeleton_modification_2d_ccdik.h
rename to scene/resources/2d/skeleton/skeleton_modification_2d_ccdik.h
index 39ea02c1dfc9..34da89c31ce6 100644
--- a/scene/resources/skeleton_modification_2d_ccdik.h
+++ b/scene/resources/2d/skeleton/skeleton_modification_2d_ccdik.h
@@ -32,7 +32,7 @@
 #define SKELETON_MODIFICATION_2D_CCDIK_H
 
 #include "scene/2d/skeleton_2d.h"
-#include "scene/resources/skeleton_modification_2d.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d.h"
 
 ///////////////////////////////////////
 // SkeletonModification2DCCDIK
diff --git a/scene/resources/skeleton_modification_2d_fabrik.cpp b/scene/resources/2d/skeleton/skeleton_modification_2d_fabrik.cpp
similarity index 100%
rename from scene/resources/skeleton_modification_2d_fabrik.cpp
rename to scene/resources/2d/skeleton/skeleton_modification_2d_fabrik.cpp
diff --git a/scene/resources/skeleton_modification_2d_fabrik.h b/scene/resources/2d/skeleton/skeleton_modification_2d_fabrik.h
similarity index 98%
rename from scene/resources/skeleton_modification_2d_fabrik.h
rename to scene/resources/2d/skeleton/skeleton_modification_2d_fabrik.h
index 3c8f1f779c3f..edc29ecf12f2 100644
--- a/scene/resources/skeleton_modification_2d_fabrik.h
+++ b/scene/resources/2d/skeleton/skeleton_modification_2d_fabrik.h
@@ -32,7 +32,7 @@
 #define SKELETON_MODIFICATION_2D_FABRIK_H
 
 #include "scene/2d/skeleton_2d.h"
-#include "scene/resources/skeleton_modification_2d.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d.h"
 
 ///////////////////////////////////////
 // SkeletonModification2DFABRIK
diff --git a/scene/resources/skeleton_modification_2d_jiggle.cpp b/scene/resources/2d/skeleton/skeleton_modification_2d_jiggle.cpp
similarity index 100%
rename from scene/resources/skeleton_modification_2d_jiggle.cpp
rename to scene/resources/2d/skeleton/skeleton_modification_2d_jiggle.cpp
diff --git a/scene/resources/skeleton_modification_2d_jiggle.h b/scene/resources/2d/skeleton/skeleton_modification_2d_jiggle.h
similarity index 98%
rename from scene/resources/skeleton_modification_2d_jiggle.h
rename to scene/resources/2d/skeleton/skeleton_modification_2d_jiggle.h
index 9e0d8d1bd455..7e9855839c2e 100644
--- a/scene/resources/skeleton_modification_2d_jiggle.h
+++ b/scene/resources/2d/skeleton/skeleton_modification_2d_jiggle.h
@@ -32,7 +32,7 @@
 #define SKELETON_MODIFICATION_2D_JIGGLE_H
 
 #include "scene/2d/skeleton_2d.h"
-#include "scene/resources/skeleton_modification_2d.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d.h"
 
 ///////////////////////////////////////
 // SkeletonModification2DJIGGLE
diff --git a/scene/resources/skeleton_modification_2d_lookat.cpp b/scene/resources/2d/skeleton/skeleton_modification_2d_lookat.cpp
similarity index 100%
rename from scene/resources/skeleton_modification_2d_lookat.cpp
rename to scene/resources/2d/skeleton/skeleton_modification_2d_lookat.cpp
diff --git a/scene/resources/skeleton_modification_2d_lookat.h b/scene/resources/2d/skeleton/skeleton_modification_2d_lookat.h
similarity index 98%
rename from scene/resources/skeleton_modification_2d_lookat.h
rename to scene/resources/2d/skeleton/skeleton_modification_2d_lookat.h
index d952d249f9ec..fbce45b83ab7 100644
--- a/scene/resources/skeleton_modification_2d_lookat.h
+++ b/scene/resources/2d/skeleton/skeleton_modification_2d_lookat.h
@@ -32,7 +32,7 @@
 #define SKELETON_MODIFICATION_2D_LOOKAT_H
 
 #include "scene/2d/skeleton_2d.h"
-#include "scene/resources/skeleton_modification_2d.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d.h"
 
 ///////////////////////////////////////
 // SkeletonModification2DLookAt
diff --git a/scene/resources/skeleton_modification_2d_physicalbones.cpp b/scene/resources/2d/skeleton/skeleton_modification_2d_physicalbones.cpp
similarity index 100%
rename from scene/resources/skeleton_modification_2d_physicalbones.cpp
rename to scene/resources/2d/skeleton/skeleton_modification_2d_physicalbones.cpp
diff --git a/scene/resources/skeleton_modification_2d_physicalbones.h b/scene/resources/2d/skeleton/skeleton_modification_2d_physicalbones.h
similarity index 98%
rename from scene/resources/skeleton_modification_2d_physicalbones.h
rename to scene/resources/2d/skeleton/skeleton_modification_2d_physicalbones.h
index ec1b63bf7399..09bf00782cf1 100644
--- a/scene/resources/skeleton_modification_2d_physicalbones.h
+++ b/scene/resources/2d/skeleton/skeleton_modification_2d_physicalbones.h
@@ -32,7 +32,7 @@
 #define SKELETON_MODIFICATION_2D_PHYSICALBONES_H
 
 #include "scene/2d/skeleton_2d.h"
-#include "scene/resources/skeleton_modification_2d.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d.h"
 
 ///////////////////////////////////////
 // SkeletonModification2DJIGGLE
diff --git a/scene/resources/skeleton_modification_2d_stackholder.cpp b/scene/resources/2d/skeleton/skeleton_modification_2d_stackholder.cpp
similarity index 100%
rename from scene/resources/skeleton_modification_2d_stackholder.cpp
rename to scene/resources/2d/skeleton/skeleton_modification_2d_stackholder.cpp
diff --git a/scene/resources/skeleton_modification_2d_stackholder.h b/scene/resources/2d/skeleton/skeleton_modification_2d_stackholder.h
similarity index 98%
rename from scene/resources/skeleton_modification_2d_stackholder.h
rename to scene/resources/2d/skeleton/skeleton_modification_2d_stackholder.h
index 17fa5f5cfee4..b1054f642960 100644
--- a/scene/resources/skeleton_modification_2d_stackholder.h
+++ b/scene/resources/2d/skeleton/skeleton_modification_2d_stackholder.h
@@ -32,7 +32,7 @@
 #define SKELETON_MODIFICATION_2D_STACKHOLDER_H
 
 #include "scene/2d/skeleton_2d.h"
-#include "scene/resources/skeleton_modification_2d.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d.h"
 
 ///////////////////////////////////////
 // SkeletonModification2DJIGGLE
diff --git a/scene/resources/skeleton_modification_2d_twoboneik.cpp b/scene/resources/2d/skeleton/skeleton_modification_2d_twoboneik.cpp
similarity index 100%
rename from scene/resources/skeleton_modification_2d_twoboneik.cpp
rename to scene/resources/2d/skeleton/skeleton_modification_2d_twoboneik.cpp
diff --git a/scene/resources/skeleton_modification_2d_twoboneik.h b/scene/resources/2d/skeleton/skeleton_modification_2d_twoboneik.h
similarity index 98%
rename from scene/resources/skeleton_modification_2d_twoboneik.h
rename to scene/resources/2d/skeleton/skeleton_modification_2d_twoboneik.h
index 7a5cd91c868b..d528ffa66b0f 100644
--- a/scene/resources/skeleton_modification_2d_twoboneik.h
+++ b/scene/resources/2d/skeleton/skeleton_modification_2d_twoboneik.h
@@ -32,7 +32,7 @@
 #define SKELETON_MODIFICATION_2D_TWOBONEIK_H
 
 #include "scene/2d/skeleton_2d.h"
-#include "scene/resources/skeleton_modification_2d.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d.h"
 
 ///////////////////////////////////////
 // SkeletonModification2DJIGGLE
diff --git a/scene/resources/skeleton_modification_stack_2d.cpp b/scene/resources/2d/skeleton/skeleton_modification_stack_2d.cpp
similarity index 100%
rename from scene/resources/skeleton_modification_stack_2d.cpp
rename to scene/resources/2d/skeleton/skeleton_modification_stack_2d.cpp
diff --git a/scene/resources/skeleton_modification_stack_2d.h b/scene/resources/2d/skeleton/skeleton_modification_stack_2d.h
similarity index 98%
rename from scene/resources/skeleton_modification_stack_2d.h
rename to scene/resources/2d/skeleton/skeleton_modification_stack_2d.h
index 6e501436fd39..073215399701 100644
--- a/scene/resources/skeleton_modification_stack_2d.h
+++ b/scene/resources/2d/skeleton/skeleton_modification_stack_2d.h
@@ -32,7 +32,7 @@
 #define SKELETON_MODIFICATION_STACK_2D_H
 
 #include "scene/2d/skeleton_2d.h"
-#include "scene/resources/skeleton_modification_2d.h"
+#include "scene/resources/2d/skeleton/skeleton_modification_2d.h"
 
 ///////////////////////////////////////
 // SkeletonModificationStack2D
diff --git a/scene/resources/tile_set.compat.inc b/scene/resources/2d/tile_set.compat.inc
similarity index 100%
rename from scene/resources/tile_set.compat.inc
rename to scene/resources/2d/tile_set.compat.inc
diff --git a/scene/resources/tile_set.cpp b/scene/resources/2d/tile_set.cpp
similarity index 99%
rename from scene/resources/tile_set.cpp
rename to scene/resources/2d/tile_set.cpp
index 7e08d727ac11..5ac7f127b016 100644
--- a/scene/resources/tile_set.cpp
+++ b/scene/resources/2d/tile_set.cpp
@@ -36,7 +36,6 @@
 #include "core/templates/local_vector.h"
 #include "core/templates/rb_set.h"
 #include "scene/gui/control.h"
-#include "scene/resources/convex_polygon_shape_2d.h"
 #include "scene/resources/image_texture.h"
 #include "servers/navigation_server_2d.h"
 
diff --git a/scene/resources/tile_set.h b/scene/resources/2d/tile_set.h
similarity index 99%
rename from scene/resources/tile_set.h
rename to scene/resources/2d/tile_set.h
index f26ed461c303..b55afd2de59e 100644
--- a/scene/resources/tile_set.h
+++ b/scene/resources/2d/tile_set.h
@@ -37,13 +37,11 @@
 #include "core/templates/rb_set.h"
 #include "scene/2d/light_occluder_2d.h"
 #include "scene/main/canvas_item.h"
-#include "scene/resources/concave_polygon_shape_2d.h"
-#include "scene/resources/convex_polygon_shape_2d.h"
+#include "scene/resources/2d/convex_polygon_shape_2d.h"
 #include "scene/resources/image_texture.h"
 #include "scene/resources/navigation_polygon.h"
 #include "scene/resources/packed_scene.h"
 #include "scene/resources/physics_material.h"
-#include "scene/resources/shape_2d.h"
 
 #ifndef DISABLE_DEPRECATED
 #include "scene/resources/shader.h"
diff --git a/scene/resources/world_boundary_shape_2d.cpp b/scene/resources/2d/world_boundary_shape_2d.cpp
similarity index 100%
rename from scene/resources/world_boundary_shape_2d.cpp
rename to scene/resources/2d/world_boundary_shape_2d.cpp
diff --git a/scene/resources/world_boundary_shape_2d.h b/scene/resources/2d/world_boundary_shape_2d.h
similarity index 98%
rename from scene/resources/world_boundary_shape_2d.h
rename to scene/resources/2d/world_boundary_shape_2d.h
index a79b8e4e1fe9..a7f11e39b717 100644
--- a/scene/resources/world_boundary_shape_2d.h
+++ b/scene/resources/2d/world_boundary_shape_2d.h
@@ -31,7 +31,7 @@
 #ifndef WORLD_BOUNDARY_SHAPE_2D_H
 #define WORLD_BOUNDARY_SHAPE_2D_H
 
-#include "scene/resources/shape_2d.h"
+#include "scene/resources/2d/shape_2d.h"
 
 class WorldBoundaryShape2D : public Shape2D {
 	GDCLASS(WorldBoundaryShape2D, Shape2D);
diff --git a/scene/resources/3d/SCsub b/scene/resources/3d/SCsub
new file mode 100644
index 000000000000..fdf20e0bde3f
--- /dev/null
+++ b/scene/resources/3d/SCsub
@@ -0,0 +1,6 @@
+#!/usr/bin/env python
+
+Import("env")
+
+env.add_source_files(env.scene_sources, "*.cpp")
+env.add_source_files(env.scene_sources, "skeleton/*.cpp")
diff --git a/scene/resources/box_shape_3d.cpp b/scene/resources/3d/box_shape_3d.cpp
similarity index 100%
rename from scene/resources/box_shape_3d.cpp
rename to scene/resources/3d/box_shape_3d.cpp
diff --git a/scene/resources/box_shape_3d.h b/scene/resources/3d/box_shape_3d.h
similarity index 98%
rename from scene/resources/box_shape_3d.h
rename to scene/resources/3d/box_shape_3d.h
index 8903a049e110..45c1cde5d7a0 100644
--- a/scene/resources/box_shape_3d.h
+++ b/scene/resources/3d/box_shape_3d.h
@@ -31,7 +31,7 @@
 #ifndef BOX_SHAPE_3D_H
 #define BOX_SHAPE_3D_H
 
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 class BoxShape3D : public Shape3D {
 	GDCLASS(BoxShape3D, Shape3D);
diff --git a/scene/resources/capsule_shape_3d.cpp b/scene/resources/3d/capsule_shape_3d.cpp
similarity index 100%
rename from scene/resources/capsule_shape_3d.cpp
rename to scene/resources/3d/capsule_shape_3d.cpp
diff --git a/scene/resources/capsule_shape_3d.h b/scene/resources/3d/capsule_shape_3d.h
similarity index 98%
rename from scene/resources/capsule_shape_3d.h
rename to scene/resources/3d/capsule_shape_3d.h
index 48e5851c1836..90ee3b584abb 100644
--- a/scene/resources/capsule_shape_3d.h
+++ b/scene/resources/3d/capsule_shape_3d.h
@@ -31,7 +31,7 @@
 #ifndef CAPSULE_SHAPE_3D_H
 #define CAPSULE_SHAPE_3D_H
 
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 class CapsuleShape3D : public Shape3D {
 	GDCLASS(CapsuleShape3D, Shape3D);
diff --git a/scene/resources/concave_polygon_shape_3d.cpp b/scene/resources/3d/concave_polygon_shape_3d.cpp
similarity index 100%
rename from scene/resources/concave_polygon_shape_3d.cpp
rename to scene/resources/3d/concave_polygon_shape_3d.cpp
diff --git a/scene/resources/concave_polygon_shape_3d.h b/scene/resources/3d/concave_polygon_shape_3d.h
similarity index 98%
rename from scene/resources/concave_polygon_shape_3d.h
rename to scene/resources/3d/concave_polygon_shape_3d.h
index 89ff742cb1d2..a5e46474d59e 100644
--- a/scene/resources/concave_polygon_shape_3d.h
+++ b/scene/resources/3d/concave_polygon_shape_3d.h
@@ -31,7 +31,7 @@
 #ifndef CONCAVE_POLYGON_SHAPE_3D_H
 #define CONCAVE_POLYGON_SHAPE_3D_H
 
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 class ConcavePolygonShape3D : public Shape3D {
 	GDCLASS(ConcavePolygonShape3D, Shape3D);
diff --git a/scene/resources/convex_polygon_shape_3d.cpp b/scene/resources/3d/convex_polygon_shape_3d.cpp
similarity index 100%
rename from scene/resources/convex_polygon_shape_3d.cpp
rename to scene/resources/3d/convex_polygon_shape_3d.cpp
diff --git a/scene/resources/convex_polygon_shape_3d.h b/scene/resources/3d/convex_polygon_shape_3d.h
similarity index 98%
rename from scene/resources/convex_polygon_shape_3d.h
rename to scene/resources/3d/convex_polygon_shape_3d.h
index deb3d30f9be4..7d1ac123c6a9 100644
--- a/scene/resources/convex_polygon_shape_3d.h
+++ b/scene/resources/3d/convex_polygon_shape_3d.h
@@ -31,7 +31,7 @@
 #ifndef CONVEX_POLYGON_SHAPE_3D_H
 #define CONVEX_POLYGON_SHAPE_3D_H
 
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 class ConvexPolygonShape3D : public Shape3D {
 	GDCLASS(ConvexPolygonShape3D, Shape3D);
diff --git a/scene/resources/cylinder_shape_3d.cpp b/scene/resources/3d/cylinder_shape_3d.cpp
similarity index 100%
rename from scene/resources/cylinder_shape_3d.cpp
rename to scene/resources/3d/cylinder_shape_3d.cpp
diff --git a/scene/resources/cylinder_shape_3d.h b/scene/resources/3d/cylinder_shape_3d.h
similarity index 98%
rename from scene/resources/cylinder_shape_3d.h
rename to scene/resources/3d/cylinder_shape_3d.h
index ea4b3bb96c72..bd57bc2a978f 100644
--- a/scene/resources/cylinder_shape_3d.h
+++ b/scene/resources/3d/cylinder_shape_3d.h
@@ -31,7 +31,7 @@
 #ifndef CYLINDER_SHAPE_3D_H
 #define CYLINDER_SHAPE_3D_H
 
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 class CylinderShape3D : public Shape3D {
 	GDCLASS(CylinderShape3D, Shape3D);
diff --git a/scene/resources/fog_material.cpp b/scene/resources/3d/fog_material.cpp
similarity index 100%
rename from scene/resources/fog_material.cpp
rename to scene/resources/3d/fog_material.cpp
diff --git a/scene/resources/fog_material.h b/scene/resources/3d/fog_material.h
similarity index 100%
rename from scene/resources/fog_material.h
rename to scene/resources/3d/fog_material.h
diff --git a/scene/resources/height_map_shape_3d.cpp b/scene/resources/3d/height_map_shape_3d.cpp
similarity index 100%
rename from scene/resources/height_map_shape_3d.cpp
rename to scene/resources/3d/height_map_shape_3d.cpp
diff --git a/scene/resources/height_map_shape_3d.h b/scene/resources/3d/height_map_shape_3d.h
similarity index 98%
rename from scene/resources/height_map_shape_3d.h
rename to scene/resources/3d/height_map_shape_3d.h
index eff025c816bc..363d9ec0e92c 100644
--- a/scene/resources/height_map_shape_3d.h
+++ b/scene/resources/3d/height_map_shape_3d.h
@@ -31,7 +31,7 @@
 #ifndef HEIGHT_MAP_SHAPE_3D_H
 #define HEIGHT_MAP_SHAPE_3D_H
 
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 class HeightMapShape3D : public Shape3D {
 	GDCLASS(HeightMapShape3D, Shape3D);
diff --git a/scene/resources/importer_mesh.cpp b/scene/resources/3d/importer_mesh.cpp
similarity index 100%
rename from scene/resources/importer_mesh.cpp
rename to scene/resources/3d/importer_mesh.cpp
diff --git a/scene/resources/importer_mesh.h b/scene/resources/3d/importer_mesh.h
similarity index 98%
rename from scene/resources/importer_mesh.h
rename to scene/resources/3d/importer_mesh.h
index 7a19aabd291c..ff8683449b59 100644
--- a/scene/resources/importer_mesh.h
+++ b/scene/resources/3d/importer_mesh.h
@@ -33,8 +33,8 @@
 
 #include "core/io/resource.h"
 #include "core/templates/local_vector.h"
-#include "scene/resources/concave_polygon_shape_3d.h"
-#include "scene/resources/convex_polygon_shape_3d.h"
+#include "scene/resources/3d/concave_polygon_shape_3d.h"
+#include "scene/resources/3d/convex_polygon_shape_3d.h"
 #include "scene/resources/mesh.h"
 #include "scene/resources/navigation_mesh.h"
 
diff --git a/scene/resources/mesh_library.cpp b/scene/resources/3d/mesh_library.cpp
similarity index 100%
rename from scene/resources/mesh_library.cpp
rename to scene/resources/3d/mesh_library.cpp
diff --git a/scene/resources/mesh_library.h b/scene/resources/3d/mesh_library.h
similarity index 100%
rename from scene/resources/mesh_library.h
rename to scene/resources/3d/mesh_library.h
diff --git a/scene/resources/primitive_meshes.cpp b/scene/resources/3d/primitive_meshes.cpp
similarity index 100%
rename from scene/resources/primitive_meshes.cpp
rename to scene/resources/3d/primitive_meshes.cpp
diff --git a/scene/resources/primitive_meshes.h b/scene/resources/3d/primitive_meshes.h
similarity index 100%
rename from scene/resources/primitive_meshes.h
rename to scene/resources/3d/primitive_meshes.h
diff --git a/scene/resources/separation_ray_shape_3d.cpp b/scene/resources/3d/separation_ray_shape_3d.cpp
similarity index 100%
rename from scene/resources/separation_ray_shape_3d.cpp
rename to scene/resources/3d/separation_ray_shape_3d.cpp
diff --git a/scene/resources/separation_ray_shape_3d.h b/scene/resources/3d/separation_ray_shape_3d.h
similarity index 98%
rename from scene/resources/separation_ray_shape_3d.h
rename to scene/resources/3d/separation_ray_shape_3d.h
index bf42aba77f7d..f24f0eae9e60 100644
--- a/scene/resources/separation_ray_shape_3d.h
+++ b/scene/resources/3d/separation_ray_shape_3d.h
@@ -31,7 +31,7 @@
 #ifndef SEPARATION_RAY_SHAPE_3D_H
 #define SEPARATION_RAY_SHAPE_3D_H
 
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 class SeparationRayShape3D : public Shape3D {
 	GDCLASS(SeparationRayShape3D, Shape3D);
diff --git a/scene/resources/shape_3d.cpp b/scene/resources/3d/shape_3d.cpp
similarity index 100%
rename from scene/resources/shape_3d.cpp
rename to scene/resources/3d/shape_3d.cpp
diff --git a/scene/resources/shape_3d.h b/scene/resources/3d/shape_3d.h
similarity index 100%
rename from scene/resources/shape_3d.h
rename to scene/resources/3d/shape_3d.h
diff --git a/scene/resources/skin.cpp b/scene/resources/3d/skin.cpp
similarity index 100%
rename from scene/resources/skin.cpp
rename to scene/resources/3d/skin.cpp
diff --git a/scene/resources/skin.h b/scene/resources/3d/skin.h
similarity index 100%
rename from scene/resources/skin.h
rename to scene/resources/3d/skin.h
diff --git a/scene/resources/sky_material.cpp b/scene/resources/3d/sky_material.cpp
similarity index 100%
rename from scene/resources/sky_material.cpp
rename to scene/resources/3d/sky_material.cpp
diff --git a/scene/resources/sky_material.h b/scene/resources/3d/sky_material.h
similarity index 100%
rename from scene/resources/sky_material.h
rename to scene/resources/3d/sky_material.h
diff --git a/scene/resources/sphere_shape_3d.cpp b/scene/resources/3d/sphere_shape_3d.cpp
similarity index 100%
rename from scene/resources/sphere_shape_3d.cpp
rename to scene/resources/3d/sphere_shape_3d.cpp
diff --git a/scene/resources/sphere_shape_3d.h b/scene/resources/3d/sphere_shape_3d.h
similarity index 98%
rename from scene/resources/sphere_shape_3d.h
rename to scene/resources/3d/sphere_shape_3d.h
index e98eff12e2b7..8e95cea60819 100644
--- a/scene/resources/sphere_shape_3d.h
+++ b/scene/resources/3d/sphere_shape_3d.h
@@ -31,7 +31,7 @@
 #ifndef SPHERE_SHAPE_3D_H
 #define SPHERE_SHAPE_3D_H
 
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 class SphereShape3D : public Shape3D {
 	GDCLASS(SphereShape3D, Shape3D);
diff --git a/scene/resources/world_3d.cpp b/scene/resources/3d/world_3d.cpp
similarity index 100%
rename from scene/resources/world_3d.cpp
rename to scene/resources/3d/world_3d.cpp
diff --git a/scene/resources/world_3d.h b/scene/resources/3d/world_3d.h
similarity index 100%
rename from scene/resources/world_3d.h
rename to scene/resources/3d/world_3d.h
diff --git a/scene/resources/world_boundary_shape_3d.cpp b/scene/resources/3d/world_boundary_shape_3d.cpp
similarity index 100%
rename from scene/resources/world_boundary_shape_3d.cpp
rename to scene/resources/3d/world_boundary_shape_3d.cpp
diff --git a/scene/resources/world_boundary_shape_3d.h b/scene/resources/3d/world_boundary_shape_3d.h
similarity index 98%
rename from scene/resources/world_boundary_shape_3d.h
rename to scene/resources/3d/world_boundary_shape_3d.h
index 1f4cc6747595..06cff6aa9ad7 100644
--- a/scene/resources/world_boundary_shape_3d.h
+++ b/scene/resources/3d/world_boundary_shape_3d.h
@@ -31,7 +31,7 @@
 #ifndef WORLD_BOUNDARY_SHAPE_3D_H
 #define WORLD_BOUNDARY_SHAPE_3D_H
 
-#include "scene/resources/shape_3d.h"
+#include "scene/resources/3d/shape_3d.h"
 
 class WorldBoundaryShape3D : public Shape3D {
 	GDCLASS(WorldBoundaryShape3D, Shape3D);
diff --git a/scene/resources/SCsub b/scene/resources/SCsub
index 9e21c627f943..ceff213a0293 100644
--- a/scene/resources/SCsub
+++ b/scene/resources/SCsub
@@ -22,3 +22,6 @@ env.scene_sources += scene_obj
 
 # Needed to force rebuilding the scene files when the thirdparty code is updated.
 env.Depends(scene_obj, thirdparty_obj)
+
+SConscript("2d/SCsub")
+SConscript("3d/SCsub")
diff --git a/scene/resources/mesh.cpp b/scene/resources/mesh.cpp
index dcad58e6e209..a4e634af3623 100644
--- a/scene/resources/mesh.cpp
+++ b/scene/resources/mesh.cpp
@@ -34,8 +34,8 @@
 #include "core/templates/pair.h"
 #include "scene/resources/surface_tool.h"
 
-#include "scene/resources/concave_polygon_shape_3d.h"
-#include "scene/resources/convex_polygon_shape_3d.h"
+#include "scene/resources/3d/concave_polygon_shape_3d.h"
+#include "scene/resources/3d/convex_polygon_shape_3d.h"
 
 void MeshConvexDecompositionSettings::set_max_concavity(real_t p_max_concavity) {
 	max_concavity = CLAMP(p_max_concavity, 0.001, 1.0);
diff --git a/scene/resources/mesh.h b/scene/resources/mesh.h
index 5233d750097b..5c0e4e60aa38 100644
--- a/scene/resources/mesh.h
+++ b/scene/resources/mesh.h
@@ -34,6 +34,7 @@
 #include "core/io/resource.h"
 #include "core/math/face3.h"
 #include "core/math/triangle_mesh.h"
+#include "scene/resources/3d/shape_3d.h"
 #include "scene/resources/material.h"
 #include "servers/rendering_server.h"
 
diff --git a/scu_builders.py b/scu_builders.py
index 56effb393c8e..1a75f19b302e 100644
--- a/scu_builders.py
+++ b/scu_builders.py
@@ -315,6 +315,8 @@ def generate_scu_files(max_includes_per_scu):
     process_folder(["scene/gui"])
     process_folder(["scene/main"])
     process_folder(["scene/resources"])
+    process_folder(["scene/resources/2d"])
+    process_folder(["scene/resources/3d"])
 
     process_folder(["servers"])
     process_folder(["servers/rendering"])
diff --git a/tests/scene/test_arraymesh.h b/tests/scene/test_arraymesh.h
index 1623b413007e..67aa19c5d3e6 100644
--- a/tests/scene/test_arraymesh.h
+++ b/tests/scene/test_arraymesh.h
@@ -31,8 +31,8 @@
 #ifndef TEST_ARRAYMESH_H
 #define TEST_ARRAYMESH_H
 
+#include "scene/resources/3d/primitive_meshes.h"
 #include "scene/resources/mesh.h"
-#include "scene/resources/primitive_meshes.h"
 
 #include "tests/test_macros.h"
 
diff --git a/tests/scene/test_navigation_region_3d.h b/tests/scene/test_navigation_region_3d.h
index f7cf7c79129f..372f6dc50575 100644
--- a/tests/scene/test_navigation_region_3d.h
+++ b/tests/scene/test_navigation_region_3d.h
@@ -34,7 +34,7 @@
 #include "scene/3d/mesh_instance_3d.h"
 #include "scene/3d/navigation_region_3d.h"
 #include "scene/main/window.h"
-#include "scene/resources/primitive_meshes.h"
+#include "scene/resources/3d/primitive_meshes.h"
 
 #include "tests/test_macros.h"
 
diff --git a/tests/scene/test_primitives.h b/tests/scene/test_primitives.h
index 36b9b17b279d..f105e1ac04f2 100644
--- a/tests/scene/test_primitives.h
+++ b/tests/scene/test_primitives.h
@@ -31,7 +31,7 @@
 #ifndef TEST_PRIMITIVES_H
 #define TEST_PRIMITIVES_H
 
-#include "scene/resources/primitive_meshes.h"
+#include "scene/resources/3d/primitive_meshes.h"
 
 #include "tests/test_macros.h"
 
diff --git a/tests/scene/test_viewport.h b/tests/scene/test_viewport.h
index 1afae66ee026..e15b01ae9f8a 100644
--- a/tests/scene/test_viewport.h
+++ b/tests/scene/test_viewport.h
@@ -37,7 +37,7 @@
 #include "scene/gui/subviewport_container.h"
 #include "scene/main/canvas_layer.h"
 #include "scene/main/window.h"
-#include "scene/resources/rectangle_shape_2d.h"
+#include "scene/resources/2d/rectangle_shape_2d.h"
 
 #include "tests/test_macros.h"
 
diff --git a/tests/servers/test_navigation_server_3d.h b/tests/servers/test_navigation_server_3d.h
index 5b5c1faac878..b5547f2c948a 100644
--- a/tests/servers/test_navigation_server_3d.h
+++ b/tests/servers/test_navigation_server_3d.h
@@ -32,7 +32,7 @@
 #define TEST_NAVIGATION_SERVER_3D_H
 
 #include "scene/3d/mesh_instance_3d.h"
-#include "scene/resources/primitive_meshes.h"
+#include "scene/resources/3d/primitive_meshes.h"
 #include "servers/navigation_server_3d.h"
 
 #include "tests/test_macros.h"