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Johannes Schindelin 4a58c3d7f7 stash: handle staged changes in skip-worktree files correctly 
When calling `git stash` while changes were staged for files that are
marked with the `skip-worktree` bit (e.g. files that are excluded in a
sparse checkout), the files are recorded as _deleted_ instead.

The reason is that `git stash` tries to construct the tree reflecting
the worktree essentially by copying the index to a temporary one and
then updating the files from the worktree. Crucially, it calls `git
diff-index` to update also those files that are in the HEAD but have
been unstaged in the index.

However, when the temporary index is updated via `git update-index --add
--remove`, skip-worktree entries mark the files as deleted by mistake.

Let's use the newly-introduced `--ignore-skip-worktree-entries` option
of `git update-index` to prevent exactly this from happening.

Note that the regression test case deliberately avoids replicating the
scenario described above and instead tries to recreate just the symptom.

Reported by Dan Thompson.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
2019-11-02 15:22:45 +09:00
..
add.c add: error appropriately on repository with no commits 2019-04-10 12:52:50 +09:00
am.c Merge branch 'nd/switch-and-restore' 2019-07-09 15:25:44 -07:00
annotate.c
apply.c apply.c: make init_apply_state() take a struct repository 2018-08-13 14:14:44 -07:00
archive.c pack-protocol.txt: accept error packets in any context 2019-01-02 13:05:30 -08:00
bisect--helper.c bisect--helper: verify HEAD could be parsed before continuing 2019-05-28 10:51:01 -07:00
blame.c Merge branch 'br/blame-ignore' 2019-07-19 11:30:20 -07:00
branch.c Merge branch 'po/doc-branch' 2019-07-09 15:25:34 -07:00
bundle.c create_bundle(): drop unused "header" parameter 2019-01-24 12:35:44 -08:00
cat-file.c sha1-file.c: remove the_repo from read_object_with_reference() 2019-06-27 12:45:17 -07:00
check-attr.c cache.h: flip NO_THE_INDEX_COMPATIBILITY_MACROS switch 2019-01-24 11:55:06 -08:00
check-ignore.c cache.h: flip NO_THE_INDEX_COMPATIBILITY_MACROS switch 2019-01-24 11:55:06 -08:00
check-mailmap.c
check-ref-format.c
checkout-index.c Merge branch 'nd/the-index-final' 2019-02-06 22:05:23 -08:00
checkout.c l10n: reformat some localized strings for v2.23.0 2019-08-06 12:43:43 -07:00
clean.c clean: show an error message when the path is too long 2019-07-19 08:12:44 -07:00
clone.c Merge branch 'mt/dir-iterator-updates' 2019-07-25 13:59:22 -07:00
column.c builtin: consistently pass cmd_* prefix to parse_options 2019-05-13 14:22:53 +09:00
commit-graph.c commit-graph: verify chains with --shallow mode 2019-06-19 20:46:26 -07:00
commit-tree.c commit-tree: utilize parse-options api 2019-03-08 10:31:24 +09:00
commit.c Merge branch 'ra/cherry-pick-revert-skip' 2019-07-19 11:30:21 -07:00
config.c Merge branch 'jk/save-getenv-result' 2019-01-29 12:47:54 -08:00
count-objects.c rename "alternate_object_database" to "object_directory" 2018-11-13 14:22:02 +09:00
credential.c
describe.c hashmap: convert sha1hash() to oidhash() 2019-06-20 10:44:22 -07:00
diff-files.c cache.h: flip NO_THE_INDEX_COMPATIBILITY_MACROS switch 2019-01-24 11:55:06 -08:00
diff-index.c cache.h: flip NO_THE_INDEX_COMPATIBILITY_MACROS switch 2019-01-24 11:55:06 -08:00
diff-tree.c Merge branch 'en/combined-all-paths' 2019-03-07 09:59:54 +09:00
diff.c Merge branch 'nd/diff-parseopt-4' 2019-04-25 16:41:12 +09:00
difftool.c Merge branch 'js/difftool-no-index' 2019-05-19 16:45:35 +09:00
env--helper.c env--helper: mark a file-local symbol as static 2019-07-11 14:31:04 -07:00
fast-export.c object: convert lookup_object() to use object_id 2019-06-20 10:18:09 -07:00
fetch-pack.c fetch_pack(): drop unused parameters 2019-03-20 18:34:09 +09:00
fetch.c l10n: reformat some localized strings for v2.23.0 2019-08-06 12:43:43 -07:00
fmt-merge-msg.c Merge branch 'nd/the-index' 2018-10-19 13:34:02 +09:00
for-each-ref.c parse_opt_ref_sorting: always use with NONEG flag 2019-03-21 12:03:35 +09:00
fsck.c object: convert lookup_object() to use object_id 2019-06-20 10:18:09 -07:00
gc.c Merge branch 'ds/commit-graph-incremental' 2019-07-19 11:30:20 -07:00
get-tar-commit-id.c builtin/get-tar-commit-id: make hash size independent 2019-04-01 11:57:39 +09:00
grep.c sha1-file.c: remove the_repo from read_object_with_reference() 2019-06-27 12:45:17 -07:00
hash-object.c builtin: consistently pass cmd_* prefix to parse_options 2019-05-13 14:22:53 +09:00
help.c completion: add more parameter value completion 2019-02-20 12:31:56 -08:00
index-pack.c index-pack: prefetch missing REF_DELTA bases 2019-05-15 11:01:40 +09:00
init-db.c Merge branch 'nd/init-relative-template-fix' 2019-06-13 13:18:46 -07:00
interpret-trailers.c interpret-trailers: load default config 2019-06-19 07:12:49 -07:00
log.c log: really flip the --mailmap default 2019-08-02 09:55:03 -07:00
ls-files.c cleanup: fix possible overflow errors in binary search, part 2 2019-06-13 11:28:53 -07:00
ls-remote.c parse_opt_ref_sorting: always use with NONEG flag 2019-03-21 12:03:35 +09:00
ls-tree.c Merge branch 'nd/attr-pathspec-in-tree-walk' 2019-01-14 15:29:28 -08:00
mailinfo.c
mailsplit.c
merge-base.c Merge branch 'pk/rebase-in-c-4-opts' 2018-11-02 11:04:55 +09:00
merge-file.c assert NOARG/NONEG behavior of parse-options callbacks 2018-11-06 12:56:29 +09:00
merge-index.c cache.h: flip NO_THE_INDEX_COMPATIBILITY_MACROS switch 2019-01-24 11:55:06 -08:00
merge-ours.c cache.h: flip NO_THE_INDEX_COMPATIBILITY_MACROS switch 2019-01-24 11:55:06 -08:00
merge-recursive.c Merge branch 'nd/the-index-final' 2019-02-06 22:05:23 -08:00
merge-tree.c tree-walk.c: remove the_repo from fill_tree_descriptor() 2019-06-27 12:45:17 -07:00
merge.c Merge branch 'ea/merge-code-cleanup' 2019-07-19 11:30:23 -07:00
mktag.c object-store: move object access functions to object-store.h 2018-05-16 11:42:03 +09:00
mktree.c mktree: drop unused length parameter 2019-05-13 14:22:54 +09:00
multi-pack-index.c multi-pack-index: prepare 'repack' subcommand 2019-06-11 10:34:40 -07:00
mv.c cache.h: flip NO_THE_INDEX_COMPATIBILITY_MACROS switch 2019-01-24 11:55:06 -08:00
name-rev.c object: convert lookup_object() to use object_id 2019-06-20 10:18:09 -07:00
notes.c Merge branch 'nd/the-index' into md/list-objects-filter-by-depth 2019-01-15 15:38:29 -08:00
pack-objects.c repack: silence warnings when auto-enabled bitmaps cannot be built 2019-07-31 13:15:51 -07:00
pack-redundant.c object-store: rename and expand packed_git's sha1 member 2019-04-01 11:57:38 +09:00
pack-refs.c Honor core.precomposeUnicode in more places 2019-04-26 10:54:03 +09:00
patch-id.c format-patch: make --base patch-id output stable 2019-05-08 19:27:43 +09:00
prune-packed.c Merge branch 'rj/prune-packed-excess-args' 2019-03-07 09:59:55 +09:00
prune.c object: convert lookup_object() to use object_id 2019-06-20 10:18:09 -07:00
pull.c pull: add --[no-]show-forced-updates passthrough 2019-06-21 09:38:29 -07:00
push.c Merge branch 'nd/style-opening-brace' 2019-01-18 13:49:52 -08:00
range-diff.c builtin: consistently pass cmd_* prefix to parse_options 2019-05-13 14:22:53 +09:00
read-tree.c cmd_{read,write}_tree: rename "unused" variable that is used 2019-05-13 14:22:53 +09:00
rebase.c Merge branch 'js/rebase-cleanup' 2019-07-29 12:39:14 -07:00
receive-pack.c Merge branch 'jk/check-connected-with-alternates' 2019-07-19 11:30:21 -07:00
reflog.c Merge branch 'jk/loose-object-cache-oid' 2019-02-06 22:05:27 -08:00
remote-ext.c
remote-fd.c
remote.c remove_all_fetch_refspecs(): drop unused "remote" parameter 2019-05-13 14:22:54 +09:00
repack.c repack: simplify handling of auto-bitmaps and .keep files 2019-07-31 13:26:25 -07:00
replace.c Merge branch 'cc/replace-graft-peel-tags' 2019-05-09 00:37:24 +09:00
rerere.c Merge branch 'nd/the-index' into md/list-objects-filter-by-depth 2019-01-15 15:38:29 -08:00
reset.c Merge branch 'nd/tree-walk-with-repo' 2019-07-19 11:30:21 -07:00
rev-list.c rev-list: teach --no-object-names to enable piping 2019-06-20 13:13:04 -07:00
rev-parse.c cache.h: flip NO_THE_INDEX_COMPATIBILITY_MACROS switch 2019-01-24 11:55:06 -08:00
revert.c Merge branch 'ra/cherry-pick-revert-skip' 2019-07-19 11:30:21 -07:00
rm.c Merge branch 'jc/denoise-rm-to-resolve' 2019-07-25 13:59:24 -07:00
send-pack.c pack-protocol.txt: accept error packets in any context 2019-01-02 13:05:30 -08:00
shortlog.c Merge branch 'nd/show-gitcomp-compilation-fix' into maint 2018-12-15 12:24:33 +09:00
show-branch.c show-branch: drop unused parameter from show_independent() 2019-05-13 14:22:54 +09:00
show-index.c make show-index a builtin 2018-05-29 00:28:22 +09:00
show-ref.c Merge branch 'en/unicode-in-refnames' 2019-05-19 16:45:30 +09:00
stash.c stash: handle staged changes in skip-worktree files correctly 2019-11-02 15:22:45 +09:00
stripspace.c stripspace: allow -s/-c outside git repository 2018-12-26 15:41:47 -08:00
submodule--helper.c Merge branch 'ms/submodule-foreach-fix' 2019-07-09 15:25:46 -07:00
symbolic-ref.c
tag.c tag: add tag.gpgSign config option to force all tags be GPG-signed 2019-06-05 14:39:28 -07:00
unpack-file.c object-store: move object access functions to object-store.h 2018-05-16 11:42:03 +09:00
unpack-objects.c object: convert lookup_object() to use object_id 2019-06-20 10:18:09 -07:00
update-index.c update-index: optionally leave skip-worktree entries alone 2019-11-02 15:22:00 +09:00
update-ref.c update-ref: allow --no-deref with --stdin 2018-09-12 15:17:17 -07:00
update-server-info.c
upload-archive.c archive: initialize archivers earlier 2018-10-26 10:17:59 +09:00
upload-pack.c builtin: consistently pass cmd_* prefix to parse_options 2019-05-13 14:22:53 +09:00
var.c
verify-commit.c Merge branch 'jk/no-system-includes-in-dot-c' 2019-07-31 14:38:56 -07:00
verify-pack.c
verify-tag.c verify-tag: drop signal.h include 2019-06-19 08:19:21 -07:00
worktree.c Merge branch 'nd/worktree-name-sanitization' 2019-06-13 13:19:40 -07:00
write-tree.c cmd_{read,write}_tree: rename "unused" variable that is used 2019-05-13 14:22:53 +09:00