The argv_array API is useful for not just managing argv but any
"vector" (NULL-terminated array) of strings, and has seen adoption
to a certain degree. It has been renamed to "strvec" to reduce the
barrier to adoption.
* jk/strvec:
strvec: rename struct fields
strvec: drop argv_array compatibility layer
strvec: update documention to avoid argv_array
strvec: fix indentation in renamed calls
strvec: convert remaining callers away from argv_array name
strvec: convert more callers away from argv_array name
strvec: convert builtin/ callers away from argv_array name
quote: rename sq_dequote_to_argv_array to mention strvec
strvec: rename files from argv-array to strvec
argv-array: rename to strvec
argv-array: use size_t for count and alloc
523fa69c (reflog: cleanse messages in the refs.c layer, 2020-07-10)
centralized reflog normalizaton. However, the normalizaton added a
leading "\t" to the message. This is an artifact of the reflog
storage format in the files backend, so it should be added there.
Routines that parse back the reflog (such as grab_nth_branch_switch)
expect the "\t" to not be in the message, so without this fix, git
with reftable cannot process the "@{-1}" syntax.
Signed-off-by: Han-Wen Nienhuys <hanwen@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Preliminary clean-up of the refs API in preparation for adding a
new refs backend "reftable".
* hn/reftable:
reflog: cleanse messages in the refs.c layer
bisect: treat BISECT_HEAD as a pseudo ref
t3432: use git-reflog to inspect the reflog for HEAD
lib-t6000.sh: write tag using git-update-ref
We eventually want to drop the argv_array name and just use strvec
consistently. There's no particular reason we have to do it all at once,
or care about interactions between converted and unconverted bits.
Because of our preprocessor compat layer, the names are interchangeable
to the compiler (so even a definition and declaration using different
names is OK).
This patch converts all of the remaining files, as the resulting diff is
reasonably sized.
The conversion was done purely mechanically with:
git ls-files '*.c' '*.h' |
xargs perl -i -pe '
s/ARGV_ARRAY/STRVEC/g;
s/argv_array/strvec/g;
'
We'll deal with any indentation/style fallouts separately.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
This requires updating #include lines across the code-base, but that's
all fairly mechanical, and was done with:
git ls-files '*.c' '*.h' |
xargs perl -i -pe 's/argv-array.h/strvec.h/'
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Regarding reflog messages:
- We expect that a reflog message consists of a single line. The
file format used by the files backend may add a LF after the
message as a delimiter, and output by commands like "git log -g"
may complete such an incomplete line by adding a LF at the end,
but philosophically, the terminating LF is not a part of the
message.
- We however allow callers of refs API to supply a random sequence
of NUL terminated bytes. We cleanse caller-supplied message by
squashing a run of whitespaces into a SP, and by trimming trailing
whitespace, before storing the message. This is how we tolerate,
instead of erring out, a message with LF in it (be it at the end,
in the middle, or both).
Currently, the cleansing of the reflog message is done by the files
backend, before the log is written out. This is sufficient with the
current code, as that is the only backend that writes reflogs. But
new backends can be added that write reflogs, and we'd want the
resulting log message we would read out of "log -g" the same no
matter what backend is used, and moving the code to do so to the
generic layer is a way to do so.
An added benefit is that the "cleansing" function could be updated
later, independent from individual backends, to e.g. allow
multi-line log messages if we wanted to, and when that happens, it
would help a lot to ensure we covered all bases if the cleansing
function (which would be updated) is called from the generic layer.
Side note: I am not interested in supporting multi-line reflog
messages right at the moment (nobody is asking for it), but I
envision that instead of the "squash a run of whitespaces into a SP
and rtrim" cleansing, we can %urlencode problematic bytes in the
message *AND* append a SP at the end, when a new version of Git that
supports multi-line and/or verbatim reflog messages writes a reflog
record. The reading side can detect the presense of SP at the end
(which should have been rtrimmed out if it were written by existing
versions of Git) as a signal that decoding %urlencode recovers the
original reflog message.
Signed-off-by: Han-Wen Nienhuys <hanwen@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The name of the primary branch in existing repositories, and the
default name used for the first branch in newly created
repositories, is made configurable, so that we can eventually wean
ourselves off of the hardcoded 'master'.
* js/default-branch-name:
contrib: subtree: adjust test to change in fmt-merge-msg
testsvn: respect `init.defaultBranch`
remote: use the configured default branch name when appropriate
clone: use configured default branch name when appropriate
init: allow setting the default for the initial branch name via the config
init: allow specifying the initial branch name for the new repository
docs: add missing diamond brackets
submodule: fall back to remote's HEAD for missing remote.<name>.branch
send-pack/transport-helper: avoid mentioning a particular branch
fmt-merge-msg: stop treating `master` specially
A few fields in "struct commit" that do not have to always be
present have been moved to commit slabs.
* ak/commit-graph-to-slab:
commit-graph: minimize commit_graph_data_slab access
commit: move members graph_pos, generation to a slab
commit-graph: introduce commit_graph_data_slab
object: drop parsed_object_pool->commit_count
We just introduced the command-line option
`--initial-branch=<branch-name>` to allow initializing a new repository
with a different initial branch than the hard-coded one.
To allow users to override the initial branch name more permanently
(i.e. without having to specify the name manually for each and every
`git init` invocation), let's introduce the `init.defaultBranch` config
setting.
Helped-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Helped-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Don Goodman-Wilson <don@goodman-wilson.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The low-level reference transactions used to update references are
currently completely opaque to the user. While certainly desirable in
most usecases, there are some which might want to hook into the
transaction to observe all queued reference updates as well as observing
the abortion or commit of a prepared transaction.
One such usecase would be to have a set of replicas of a given Git
repository, where we perform Git operations on all of the repositories
at once and expect the outcome to be the same in all of them. While
there exist hooks already for a certain subset of Git commands that
could be used to implement a voting mechanism for this, many others
currently don't have any mechanism for this.
The above scenario is the motivation for the new "reference-transaction"
hook that reaches directly into Git's reference transaction mechanism.
The hook receives as parameter the current state the transaction was
moved to ("prepared", "committed" or "aborted") and gets via its
standard input all queued reference updates. While the exit code gets
ignored in the "committed" and "aborted" states, a non-zero exit code in
the "prepared" state will cause the transaction to be aborted
prematurely.
Given the usecase described above, a voting mechanism can now be
implemented via this hook: as soon as it gets called, it will take all
of stdin and use it to cast a vote to a central service. When all
replicas of the repository agree, the hook will exit with zero,
otherwise it will abort the transaction by returning non-zero. The most
important upside is that this will catch _all_ commands writing
references at once, allowing to implement strong consistency for
reference updates via a single mechanism.
In order to test the impact on the case where we don't have any
"reference-transaction" hook installed in the repository, this commit
introduce two new performance tests for git-update-refs(1). Run against
an empty repository, it produces the following results:
Test origin/master HEAD
--------------------------------------------------------------------
1400.2: update-ref 2.70(2.10+0.71) 2.71(2.10+0.73) +0.4%
1400.3: update-ref --stdin 0.21(0.09+0.11) 0.21(0.07+0.14) +0.0%
The performance test p1400.2 creates, updates and deletes a branch a
thousand times, thus averaging runtime of git-update-refs over 3000
invocations. p1400.3 instead calls `git-update-refs --stdin` three times
and queues a thousand creations, updates and deletes respectively.
As expected, p1400.3 consistently shows no noticeable impact, as for
each batch of updates there's a single call to access(3P) for the
negative hook lookup. On the other hand, for p1400.2, one can see an
impact caused by this patchset. But doing five runs of the performance
tests where each one was run with GIT_PERF_REPEAT_COUNT=10, the overhead
ranged from -1.5% to +1.1%. These inconsistent performance numbers can
be explained by the overhead of spawning 3000 processes. This shows that
the overhead of assembling the hook path and executing access(3P) once
to check if it's there is mostly outweighed by the operating system's
overhead.
Signed-off-by: Patrick Steinhardt <ps@pks.im>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
14ba97f8 (alloc: allow arbitrary repositories for alloc functions,
2018-05-15) introduced parsed_object_pool->commit_count to keep count of
commits per repository and was used to assign commit->index.
However, commit-slab code requires commit->index values to be unique
and a global count would be correct, rather than a per-repo count.
Let's introduce a static counter variable, `parsed_commits_count` to
keep track of parsed commits so far.
As commit_count has no use anymore, let's also drop it from the struct.
Signed-off-by: Abhishek Kumar <abhishekkumar8222@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The "--decorate-refs" and "--decorate-refs-exclude" options "git
log" takes have learned a companion configuration variable
log.excludeDecoration that sits at the lowest priority in the
family.
* ds/log-exclude-decoration-config:
log: add log.excludeDecoration config option
log-tree: make ref_filter_match() a helper method
We've left the command line parsing of "git log :/a/b/" broken for
about a full year without anybody noticing, which has been
corrected.
* jc/missing-ref-store-fix:
repository: mark the "refs" pointer as private
sha1-name: do not assume that the ref store is initialized
The ref_filter_match() method is defined in refs.h and implemented
in refs.c, but is only used by add_ref_decoration() in log-tree.c.
Move it into that file as a static helper method. The
match_ref_pattern() comes along for the ride.
While moving the code, also make a slight adjustment to have
ref_filter_match() take a struct decoration_filter pointer instead
of multiple string lists. This is non-functional, but will make a
later change be much cleaner.
The diff is easier to parse when using the --color-moved option.
Reported-by: Junio C Hamano <gister@pobox.com>
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The "refs" pointer in a struct repository starts life as NULL, but then
is lazily initialized when it is accessed via get_main_ref_store().
However, it's easy for calling code to forget this and access it
directly, leading to code which works _some_ of the time, but fails if
it is called before anybody else accesses the refs.
This was the cause of the bug fixed by 5ff4b920eb (sha1-name: do not
assume that the ref store is initialized, 2020-04-09). In order to
prevent similar bugs, let's more clearly mark the "refs" field as
private.
In addition to helping future code, the name change will help us audit
any existing direct uses. Besides get_main_ref_store() itself, it turns
out there is only one. But we know it's OK as it is on the line directly
after the fix from 5ff4b920eb, which will have initialized the pointer.
However it's still a good idea for it to model the proper use of the
accessing function, so we'll convert it.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Comments stating that "struct hashmap_entry" must be the first
member in a struct are no longer valid.
Suggested-by: Phillip Wood <phillip.wood123@gmail.com>
Signed-off-by: Eric Wong <e@80x24.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Another step in eliminating the requirement of hashmap_entry
being the first member of a struct.
Signed-off-by: Eric Wong <e@80x24.org>
Reviewed-by: Derrick Stolee <stolee@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Update callers to use hashmap_get_entry, hashmap_get_entry_from_hash
or container_of as appropriate.
This is another step towards eliminating the requirement of
hashmap_entry being the first field in a struct.
Signed-off-by: Eric Wong <e@80x24.org>
Reviewed-by: Derrick Stolee <stolee@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
This is less error-prone than "void *" as the compiler now
detects invalid types being passed.
Signed-off-by: Eric Wong <e@80x24.org>
Reviewed-by: Derrick Stolee <stolee@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
C compilers do type checking to make life easier for us. So
rely on that and update all hashmap_entry_init callers to take
"struct hashmap_entry *" to avoid future bugs while improving
safety and readability.
Signed-off-by: Eric Wong <e@80x24.org>
Reviewed-by: Derrick Stolee <stolee@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
There are no callers left of lookup_unknown_object() that aren't just
passing us the "hash" member of a "struct object_id". Let's take the
whole struct, which gets us closer to removing all raw sha1 variables.
It also matches the existing conversions of lookup_blob(), etc.
The conversions of callers were done by hand, but they're all mechanical
one-liners.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
In recent versions of Git, per-worktree refs are exposed in
refs/worktrees/<wtname>/ hierarchy, which means that worktree names
must be a valid refname component. The code now sanitizes the names
given to worktrees, to make sure these refs are well-formed.
* nd/worktree-name-sanitization:
worktree add: sanitize worktree names
Worktree names are based on $(basename $GIT_WORK_TREE). They aren't
significant until 3a3b9d8cde (refs: new ref types to make per-worktree
refs visible to all worktrees - 2018-10-21), where worktree name could
be part of a refname and must follow refname rules.
Update 'worktree add' code to remove special characters to follow
these rules. In the future the user will be able to specify the
worktree name by themselves if they're not happy with this dumb
character substitution.
Reported-by: Konstantin Kharlamov <hi-angel@yandex.ru>
Helped-by: Jeff King <peff@peff.net>
Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The only remaining callers of has_sha1_file() actually have an object_id
already. They can use the "object" variant, rather than dereferencing
the hash themselves.
The code changes here were completely generated by the included
coccinelle patch.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
"rev-parse --exclude=<pattern> --branches=<pattern>" etc. did not
quite work, which has been corrected.
* ra/rev-parse-exclude-glob:
refs: fix some exclude patterns being ignored
refs: show --exclude failure with --branches/tags/remotes=glob
The code to traverse objects for reachability, used to decide what
objects are unreferenced and expendable, have been taught to also
consider per-worktree refs of other worktrees as starting points to
prevent data loss.
* nd/per-worktree-ref-iteration:
git-worktree.txt: correct linkgit command name
reflog expire: cover reflog from all worktrees
fsck: check HEAD and reflog from other worktrees
fsck: move fsck_head_link() to get_default_heads() to avoid some globals
revision.c: better error reporting on ref from different worktrees
revision.c: correct a parameter name
refs: new ref types to make per-worktree refs visible to all worktrees
Add a place for (not) sharing stuff between worktrees
refs.c: indent with tabs, not spaces
`--exclude` from rev-list and rev-parse fails to exclude references if
the next `--branches`, `--tags` or `--remotes` use the optional
inclusive glob because those options are implemented as particular cases
of `--glob=`, which itself requires that exclude patterns begin with
'refs/'.
But it makes sense for `--branches=glob` and friends to be aware that
exclusions patterns for them shouldn't be 'refs/<type>/' prefixed, the
same way exclude patterns for `--branches` and friends (without the
optional glob) already are.
Let's record in 'refs.c:struct ref_filter' which context the exclude
pattern is tied to, so refs.c:filter_refs() can decide if it should
ignore the prefix when trying to match.
Signed-off-by: Rafael Ascensão <rafa.almas@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
One of the problems with multiple worktree is accessing per-worktree
refs of one worktree from another worktree. This was sort of solved by
multiple ref store, where the code can open the ref store of another
worktree and has access to the ref space of that worktree.
The problem with this is reporting. "HEAD" in another ref space is
also called "HEAD" like in the current ref space. In order to
differentiate them, all the code must somehow carry the ref store
around and print something like "HEAD from this ref store".
But that is not feasible (or possible with a _lot_ of work). With the
current design, we pass a reference around as a string (so called
"refname"). Extending this design to pass a string _and_ a ref store
is a nightmare, especially when handling extended SHA-1 syntax.
So we do it another way. Instead of entering a separate ref space, we
make refs from other worktrees available in the current ref space. So
"HEAD" is always HEAD of the current worktree, but then we can have
"worktrees/blah/HEAD" to denote HEAD from a worktree named
"blah". This syntax coincidentally matches the underlying directory
structure which makes implementation a bit easier.
The main worktree has to be treated specially because well... it's
special from the beginning. So HEAD from the main worktree is
acccessible via the name "main-worktree/HEAD" instead of
"worktrees/main/HEAD" because "main" could be just another secondary
worktree.
This patch also makes it possible to specify refs from one worktree in
another one, e.g.
git log worktrees/foo/HEAD
Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The recently introduced commit-graph auxiliary data is incompatible
with mechanisms such as replace & grafts that "breaks" immutable
nature of the object reference relationship. Disable optimizations
based on its use (and updating existing commit-graph) when these
incompatible features are in use in the repository.
* ds/commit-graph-with-grafts:
commit-graph: close_commit_graph before shallow walk
commit-graph: not compatible with uninitialized repo
commit-graph: not compatible with grafts
commit-graph: not compatible with replace objects
test-repository: properly init repo
commit-graph: update design document
refs.c: upgrade for_each_replace_ref to be a each_repo_ref_fn callback
refs.c: migrate internal ref iteration to pass thru repository argument
When multiple worktrees are used, we need rules to determine if
something belongs to one worktree or all of them. Instead of keeping
adding rules when new stuff comes (*), have a generic rule:
- Inside $GIT_DIR, which is per-worktree by default, add
$GIT_DIR/common which is always shared. New features that want to
share stuff should put stuff under this directory.
- Inside refs/, which is shared by default except refs/bisect, add
refs/worktree/ which is per-worktree. We may eventually move
refs/bisect to this new location and remove the exception in refs
code.
(*) And it may also include stuff from external commands which will
have no way to modify common/per-worktree rules.
Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
This is the flip side of the previous two patches: checking
for a non-zero oidcmp() can be more strictly expressed as
inequality. Like those patches, we write "!= 0" in the
coccinelle transformation, which covers by isomorphism the
more common:
if (oidcmp(E1, E2))
As with the previous two patches, this patch can be achieved
almost entirely by running "make coccicheck"; the only
differences are manual line-wrap fixes to match the original
code.
There is one thing to note for anybody replicating this,
though: coccinelle 1.0.4 seems to miss the case in
builtin/tag.c, even though it's basically the same as all
the others. Running with 1.0.7 does catch this, so
presumably it's just a coccinelle bug that was fixed in the
interim.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
In 60ce76d358 (refs: add repository argument to for_each_replace_ref,
2018-04-11) and 0d296c57ae (refs: allow for_each_replace_ref to handle
arbitrary repositories, 2018-04-11), for_each_replace_ref learned how
to iterate over refs by a given arbitrary repository.
New attempts in the object store conversion have shown that it is useful
to have the repository handle available that the refs iteration is
currently iterating over.
To achieve this goal we will need to add a repository argument to
each_ref_fn in refs.h. However as many callers rely on the signature
such a patch would be too large.
So convert the internals of the ref subsystem first to pass through a
repository argument without exposing the change to the user. Assume
the_repository for the passed through repository, although it is not
used anywhere yet.
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
"git fetch $there refs/heads/s" ought to fetch the tip of the
branch 's', but when "refs/heads/refs/heads/s", i.e. a branch whose
name is "refs/heads/s" exists at the same time, fetched that one
instead by mistake. This has been corrected to honor the usual
disambiguation rules for abbreviated refnames.
* jt/refspec-dwim-precedence-fix:
remote: make refspec follow the same disambiguation rule as local refs
Many more strings are prepared for l10n.
* nd/i18n: (23 commits)
transport-helper.c: mark more strings for translation
transport.c: mark more strings for translation
sha1-file.c: mark more strings for translation
sequencer.c: mark more strings for translation
replace-object.c: mark more strings for translation
refspec.c: mark more strings for translation
refs.c: mark more strings for translation
pkt-line.c: mark more strings for translation
object.c: mark more strings for translation
exec-cmd.c: mark more strings for translation
environment.c: mark more strings for translation
dir.c: mark more strings for translation
convert.c: mark more strings for translation
connect.c: mark more strings for translation
config.c: mark more strings for translation
commit-graph.c: mark more strings for translation
builtin/replace.c: mark more strings for translation
builtin/pack-objects.c: mark more strings for translation
builtin/grep.c: mark strings for translation
builtin/config.c: mark more strings for translation
...
When matching a non-wildcard LHS of a refspec against a list of
refs, find_ref_by_name_abbrev() returns the first ref that matches
using any DWIM rules used by refname_match() in refs.c, even if a
better match occurs later in the list of refs.
This causes unexpected behavior when (for example) fetching using
the refspec "refs/heads/s:<something>" from a remote with both
"refs/heads/refs/heads/s" and "refs/heads/s"; even if the former was
inadvertently created, one would still expect the latter to be
fetched. Similarly, when both a tag T and a branch T exist,
fetching T should favor the tag, just like how local refname
disambiguation rule works. But because the code walks over
ls-remote output from the remote, which happens to be sorted in
alphabetical order and has refs/heads/T before refs/tags/T, a
request to fetch T is (mis)interpreted as fetching refs/heads/T.
Update refname_match(), all of whose current callers care only if it
returns non-zero (i.e. matches) to see if an abbreviated name can
mean the full name being tested, so that it returns a positive
integer whose magnitude can be used to tell the precedence, and fix
the find_ref_by_name_abbrev() function not to stop at the first
match but find the match with the highest precedence.
This is based on an earlier work, which special cased only the exact
matches, by Jonathan Tan.
Helped-by: Jonathan Tan <jonathantanmy@google.com>
Helped-by: Jonathan Nieder <jrnieder@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Many messages will be marked for translation in the following
commits. This commit updates some of them to be more consistent and
reduce diff noise in those commits. Changes are
- keep the first letter of die(), error() and warning() in lowercase
- no full stop in die(), error() or warning() if it's single sentence
messages
- indentation
- some messages are turned to BUG(), or prefixed with "BUG:" and will
not be marked for i18n
- some messages are improved to give more information
- some messages are broken down by sentence to be i18n friendly
(on the same token, combine multiple warning() into one big string)
- the trailing \n is converted to printf_ln if possible, or deleted
if not redundant
- errno_errno() is used instead of explicit strerror()
Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The conversion to pass "the_repository" and then "a_repository"
throughout the object access API continues.
* sb/object-store-grafts:
commit: allow lookup_commit_graft to handle arbitrary repositories
commit: allow prepare_commit_graft to handle arbitrary repositories
shallow: migrate shallow information into the object parser
path.c: migrate global git_path_* to take a repository argument
cache: convert get_graft_file to handle arbitrary repositories
commit: convert read_graft_file to handle arbitrary repositories
commit: convert register_commit_graft to handle arbitrary repositories
commit: convert commit_graft_pos() to handle arbitrary repositories
shallow: add repository argument to is_repository_shallow
shallow: add repository argument to check_shallow_file_for_update
shallow: add repository argument to register_shallow
shallow: add repository argument to set_alternate_shallow_file
commit: add repository argument to lookup_commit_graft
commit: add repository argument to prepare_commit_graft
commit: add repository argument to read_graft_file
commit: add repository argument to register_commit_graft
commit: add repository argument to commit_graft_pos
object: move grafts to object parser
object-store: move object access functions to object-store.h
