alloc_nr, ALLOC_GROW, and ALLOC_GROW_BY are commonly used macros for
dynamic array allocation. Moving these macros to git-compat-util.h with
the other alloc macros focuses alloc.[ch] to allocation for Git objects
and additionally allows us to remove inclusions to alloc.h from files
that solely used the above macros.
Signed-off-by: Calvin Wan <calvinwan@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The vast majority of files including object-store.h did not need dir.h
nor khash.h. Split the header into two files, and let most just depend
upon object-store-ll.h, while letting the two callers that need it
depend on the full object-store.h.
After this patch:
$ git grep -h include..object-store | sort | uniq -c
2 #include "object-store.h"
129 #include "object-store-ll.h"
Diff best viewed with `--color-moved`.
Signed-off-by: Elijah Newren <newren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
cache.h's nature of a dumping ground of includes prevented it from
being included in some compat/ files, forcing us into a workaround
of having a double forward declaration of the read_in_full() function
(see commit 14086b0a13 ("compat/pread.c: Add a forward declaration to
fix a warning", 2007-11-17)). Now that we have moved functions like
read_in_full() from cache.h to wrapper.h, and wrapper.h isn't littered
with unrelated and scary #defines, get rid of the extra forward
declaration and just have compat/pread.c include wrapper.h.
Signed-off-by: Elijah Newren <newren@gmail.com>
Acked-by: Calvin Wan <calvinwan@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
* ab/remove-implicit-use-of-the-repository:
libs: use "struct repository *" argument, not "the_repository"
post-cocci: adjust comments for recent repo_* migration
cocci: apply the "revision.h" part of "the_repository.pending"
cocci: apply the "rerere.h" part of "the_repository.pending"
cocci: apply the "refs.h" part of "the_repository.pending"
cocci: apply the "promisor-remote.h" part of "the_repository.pending"
cocci: apply the "packfile.h" part of "the_repository.pending"
cocci: apply the "pretty.h" part of "the_repository.pending"
cocci: apply the "object-store.h" part of "the_repository.pending"
cocci: apply the "diff.h" part of "the_repository.pending"
cocci: apply the "commit.h" part of "the_repository.pending"
cocci: apply the "commit-reach.h" part of "the_repository.pending"
cocci: apply the "cache.h" part of "the_repository.pending"
cocci: add missing "the_repository" macros to "pending"
cocci: sort "the_repository" rules by header
cocci: fix incorrect & verbose "the_repository" rules
cocci: remove dead rule from "the_repository.pending.cocci"
Apply the part of "the_repository.pending.cocci" pertaining to
"object-store.h".
Signed-off-by: Ævar Arnfjörð Bjarmason <avarab@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
With the change in the last commit to move several functions to
write-or-die.h, csum-file.h no longer needs to include cache.h.
However, removing that include forces several other C files, which
directly or indirectly dependend upon csum-file.h's inclusion of
cache.h, to now be more explicit about their dependencies.
Signed-off-by: Elijah Newren <newren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Dozens of files made use of gettext functions, without explicitly
including gettext.h. This made it more difficult to find which files
could remove a dependence on cache.h. Make C files explicitly include
gettext.h if they are using it.
However, while compat/fsmonitor/fsm-ipc-darwin.c should also gain an
include of gettext.h, it was left out to avoid conflicting with an
in-flight topic.
Signed-off-by: Elijah Newren <newren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
This allows us to replace includes of cache.h with includes of the much
smaller alloc.h in many places. It does mean that we also need to add
includes of alloc.h in a number of C files.
Signed-off-by: Elijah Newren <newren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
On FreeBSD, this mode is not supported. But since 3a251bac0d (trace2:
only include "fsync" events if we git_fsync(), 2022-07-18) t5351 will
fail if this mode is unsupported.
Let's address this in the minimal fashion, by detecting that that mode
is unsupported and expecting a different count of hardware flushes in
that case.
This fixes the CI/PR builds on FreeBSD again.
Note: A better way would be to test only what is relevant in t5351.6
"unpack big object in stream (core.fsyncmethod=batch)" again instead of
blindly comparing the output against some exact text. But that would
pretty much revert the idea of above-mentioned commit, and that commit
was _just_ accepted into Git's main branch so one must assume that it
was intentional.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
A mechanism to pack unreachable objects into a "cruft pack",
instead of ejecting them into loose form to be reclaimed later, has
been introduced.
* tb/cruft-packs:
sha1-file.c: don't freshen cruft packs
builtin/gc.c: conditionally avoid pruning objects via loose
builtin/repack.c: add cruft packs to MIDX during geometric repack
builtin/repack.c: use named flags for existing_packs
builtin/repack.c: allow configuring cruft pack generation
builtin/repack.c: support generating a cruft pack
builtin/pack-objects.c: --cruft with expiration
reachable: report precise timestamps from objects in cruft packs
reachable: add options to add_unseen_recent_objects_to_traversal
builtin/pack-objects.c: --cruft without expiration
builtin/pack-objects.c: return from create_object_entry()
t/helper: add 'pack-mtimes' test-tool
pack-mtimes: support writing pack .mtimes files
chunk-format.h: extract oid_version()
pack-write: pass 'struct packing_data' to 'stage_tmp_packfiles'
pack-mtimes: support reading .mtimes files
Documentation/technical: add cruft-packs.txt
Introduce a filesystem-dependent mechanism to optimize the way the
bits for many loose object files are ensured to hit the disk
platter.
* ns/batch-fsync:
core.fsyncmethod: performance tests for batch mode
t/perf: add iteration setup mechanism to perf-lib
core.fsyncmethod: tests for batch mode
test-lib-functions: add parsing helpers for ls-files and ls-tree
core.fsync: use batch mode and sync loose objects by default on Windows
unpack-objects: use the bulk-checkin infrastructure
update-index: use the bulk-checkin infrastructure
builtin/add: add ODB transaction around add_files_to_cache
cache-tree: use ODB transaction around writing a tree
core.fsyncmethod: batched disk flushes for loose-objects
bulk-checkin: rebrand plug/unplug APIs as 'odb transactions'
bulk-checkin: rename 'state' variable and separate 'plugged' boolean
This structure will be used to communicate the per-object mtimes when
writing a cruft pack. Here, we need the full packing_data structure
because the mtime information is stored in an array there, not on the
individual object_entry's themselves (to avoid paying the overhead in
structure width for operations which do not generate a cruft pack).
We haven't passed this information down before because one of the two
callers (in bulk-checkin.c) does not have a packing_data structure at
all. In that case (where no cruft pack will be generated), NULL is
passed instead.
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
When adding many objects to a repo with `core.fsync=loose-object`,
the cost of fsync'ing each object file can become prohibitive.
One major source of the cost of fsync is the implied flush of the
hardware writeback cache within the disk drive. This commit introduces
a new `core.fsyncMethod=batch` option that batches up hardware flushes.
It hooks into the bulk-checkin odb-transaction functionality, takes
advantage of tmp-objdir, and uses the writeout-only support code.
When the new mode is enabled, we do the following for each new object:
1a. Create the object in a tmp-objdir.
2a. Issue a pagecache writeback request and wait for it to complete.
At the end of the entire transaction when unplugging bulk checkin:
1b. Issue an fsync against a dummy file to flush the log and hardware
writeback cache, which should by now have seen the tmp-objdir writes.
2b. Rename all of the tmp-objdir files to their final names.
3b. When updating the index and/or refs, we assume that Git will issue
another fsync internal to that operation. This is not the default
today, but the user now has the option of syncing the index and there
is a separate patch series to implement syncing of refs.
On a filesystem with a singular journal that is updated during name
operations (e.g. create, link, rename, etc), such as NTFS, HFS+, or XFS
we would expect the fsync to trigger a journal writeout so that this
sequence is enough to ensure that the user's data is durable by the time
the git command returns. This sequence also ensures that no object files
appear in the main object store unless they are fsync-durable.
Batch mode is only enabled if core.fsync includes loose-objects. If
the legacy core.fsyncObjectFiles setting is enabled, but core.fsync does
not include loose-objects, we will use file-by-file fsyncing.
In step (1a) of the sequence, the tmp-objdir is created lazily to avoid
work if no loose objects are ever added to the ODB. We use a tmp-objdir
to maintain the invariant that no loose-objects are visible in the main
ODB unless they are properly fsync-durable. This is important since
future ODB operations that try to create an object with specific
contents will silently drop the new data if an object with the target
hash exists without checking that the loose-object contents match the
hash. Only a full git-fsck would restore the ODB to a functional state
where dataloss doesn't occur.
In step (1b) of the sequence, we issue a fsync against a dummy file
created specifically for the purpose. This method has a little higher
cost than using one of the input object files, but makes adding new
callers of this mechanism easier, since we don't need to figure out
which object file is "last" or risk sharing violations by caching the fd
of the last object file.
_Performance numbers_:
Linux - Hyper-V VM running Kernel 5.11 (Ubuntu 20.04) on a fast SSD.
Mac - macOS 11.5.1 running on a Mac mini on a 1TB Apple SSD.
Windows - Same host as Linux, a preview version of Windows 11.
Adding 500 files to the repo with 'git add' Times reported in seconds.
object file syncing | Linux | Mac | Windows
--------------------|-------|-------|--------
disabled | 0.06 | 0.35 | 0.61
fsync | 1.88 | 11.18 | 2.47
batch | 0.15 | 0.41 | 1.53
Signed-off-by: Neeraj Singh <neerajsi@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Make it clearer in the naming and documentation of the plug_bulk_checkin
and unplug_bulk_checkin APIs that they can be thought of as
a "transaction" to optimize operations on the object database. These
transactions may be nested so that subsystems like the cache-tree
writing code can optimize their operations without caring whether the
top-level code has a transaction active.
Add a flush_odb_transaction API that will be used in update-index to
make objects visible even if a transaction is active. The flush call may
also be useful in future cases if we hold a transaction active around
calling hooks.
Signed-off-by: Neeraj Singh <neerajsi@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
This commit prepares for adding batch-fsync to the bulk-checkin
infrastructure.
The bulk-checkin infrastructure is currently used to batch up addition
of large blobs to a packfile. When a blob is larger than
big_file_threshold, we unconditionally add it to a pack. If bulk
checkins are 'plugged', we allow multiple large blobs to be added to a
single pack until we reach the packfile size limit; otherwise, we simply
make a new packfile for each large blob. The 'unplug' call tells us when
the series of blob additions is done so that we can finish the packfiles
and make their objects available to subsequent operations.
Stated another way, bulk-checkin allows callers to define a transaction
that adds multiple objects to the object database, where the object
database can optimize its internal operations within the transaction
boundary.
Batched fsync will fit into bulk-checkin by taking advantage of the
plug/unplug functionality to determine the appropriate time to fsync
and make newly-added objects available in the primary object database.
* Rename 'state' variable to 'bulk_checkin_packfile', since we will
later be adding 'bulk_fsync_objdir'. This also makes the variable
easier to find in the debugger, since the name is more unique.
* Rename finish_bulk_checkin to flush_bulk_checkin_packfile and call it
unconditionally from unplug_bulk_checkin. Internally it will
conditionally do a flush if there's any work to do.
* Move the 'plugged' data member of 'bulk_checkin_state' into a separate
static variable. Doing this avoids resetting the variable in
finish_bulk_checkin when zeroing the 'bulk_checkin_state'. As-is, we
seem to unintentionally disable the plugging functionality the first
time a new packfile must be created due to packfile size limits. While
disabling the plugging state only results in suboptimal behavior for
the current code, it would be fatal for the bulk-fsync functionality
later in this patch series.
The net effect of these changes is to make a clear separation between
the portion of the bulk-checkin infrastructure that is related to the
packfile (nearly all of it at present) and the part that is related to
other future optimizations of the ODB.
Signed-off-by: Neeraj Singh <neerajsi@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Replace core.fsyncObjectFiles with two new configuration variables,
core.fsync and core.fsyncMethod.
* ns/core-fsyncmethod:
core.fsync: documentation and user-friendly aggregate options
core.fsync: new option to harden the index
core.fsync: add configuration parsing
core.fsync: introduce granular fsync control infrastructure
core.fsyncmethod: add writeout-only mode
wrapper: make inclusion of Windows csprng header tightly scoped
This commit introduces the infrastructure for the core.fsync
configuration knob. The repository components we want to sync
are identified by flags so that we can turn on or off syncing
for specific components.
If core.fsyncObjectFiles is set and the core.fsync configuration
also includes FSYNC_COMPONENT_LOOSE_OBJECT, we will fsync any
loose objects. This picks the strictest data integrity behavior
if core.fsync and core.fsyncObjectFiles are set to conflicting values.
This change introduces the currently unused fsync_component
helper, which will be used by a later patch that adds fsyncing to
the refs backend.
Actual configuration and documentation of the fsync components
list are in other patches in the series to separate review of
the underlying mechanism from the policy of how it's configured.
Helped-by: Patrick Steinhardt <ps@pks.im>
Signed-off-by: Neeraj Singh <neerajsi@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Add a convenience function to wrap the xsnprintf() command that
generates loose object headers. This code was copy/pasted in various
parts of the codebase, let's define it in one place and re-use it from
there.
All except one caller of it had a valid "enum object_type" for us,
it's only write_object_file_prepare() which might need to deal with
"git hash-object --literally" and a potential garbage type. Let's have
the primary API use an "enum object_type", and define a *_literally()
function that can take an arbitrary "const char *" for the type.
See [1] for the discussion that prompted this patch, i.e. new code in
object-file.c that wanted to copy/paste the xsnprintf() invocation.
In the case of fast-import.c the callers unfortunately need to cast
back & forth between "unsigned char *" and "char *", since
format_object_header() ad encode_in_pack_object_header() take
different signedness.
1. https://lore.kernel.org/git/211213.86bl1l9bfz.gmgdl@evledraar.gmail.com/
Signed-off-by: Ævar Arnfjörð Bjarmason <avarab@gmail.com>
Signed-off-by: Jiang Xin <zhiyou.jx@alibaba-inc.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Split up the finish_tmp_packfile() function and use the split-up version
in pack-objects.c in preparation for moving the step of renaming the
*.idx file later as part of a function change.
Since the only other caller of finish_tmp_packfile() was in
bulk-checkin.c, and it won't be needing a change to its *.idx renaming,
provide a thin wrapper for the old function as a static function in that
file. If other callers end up needing the simpler version it could be
moved back to "pack-write.c" and "pack.h".
Signed-off-by: Ævar Arnfjörð Bjarmason <avarab@gmail.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Refactor the renaming in finish_tmp_packfile() into a helper function.
The callers are now expected to pass a "name_buffer" ending in
"pack-OID." instead of the previous "pack-", we then append "pack",
"idx" or "rev" to it.
By doing the strbuf_setlen() in rename_tmp_packfile() we reuse the
buffer and avoid the repeated allocations we'd get if that function had
its own temporary "struct strbuf".
This approach of reusing the buffer does make the last user in
pack-object.c's write_pack_file() slightly awkward, since we needlessly
do a strbuf_setlen() before calling strbuf_release() for consistency. In
subsequent changes we'll move that bitmap writing code around, so let's
not skip the strbuf_setlen() now.
The previous strbuf_reset() idiom originated with 5889271114
(finish_tmp_packfile():use strbuf for pathname construction,
2014-03-03), which in turn was a minimal adjustment of pre-strbuf code
added in 0e990530ae (finish_tmp_packfile(): a helper function,
2011-10-28).
Signed-off-by: Ævar Arnfjörð Bjarmason <avarab@gmail.com>
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
finish_bulk_checkin() stores the checksum from finalize_hashfile() by
writing to the `hash` member of `struct object_id`, but that hash has
nothing to do with an object id (it's just a convenient location that
happens to be sized correctly).
Store the hash directly in an unsigned char array. This behaves the same
as writing to the `hash` member, but makes the intent clearer (and
avoids allocating an extra four bytes for the `algo` member of `struct
object_id`). It likewise prevents the possibility of a segfault when
reading `algo` (e.g., by calling `oid_to_hex()`) if it is uninitialized.
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
ibuf can be reused for multiple iterations of the loop. Specifically:
deflate() overwrites s.avail_in to show how much of the input buffer
has not been processed yet - and sometimes leaves 'avail_in > 0', in
which case ibuf will be processed again during the loop's subsequent
iteration.
But if we declare ibuf within the loop, then (in theory) we get a new
(and uninitialised) buffer for every iteration. In practice, my compiler
seems to resue the same buffer - meaning that this code does work - but
it doesn't seem safe to rely on this behaviour. MSAN correctly catches
this issue - as soon as we hit the 's.avail_in > 0' condition, we end up
reading from what seems to be uninitialised memory.
Therefore, we move ibuf out of the loop, making this reuse safe.
See MSAN output from t1050-large below - the interesting part is the
ibuf creation at the end, although there's a lot of indirection before
we reach the read from unitialised memory:
==11294==WARNING: MemorySanitizer: use-of-uninitialized-value
#0 0x7f75db58fb1c in crc32_little crc32.c:283:9
#1 0x7f75db58d5b3 in crc32_z crc32.c:220:20
#2 0x7f75db59668c in crc32 crc32.c:242:12
#3 0x8c94f8 in hashwrite csum-file.c:101:15
#4 0x825faf in stream_to_pack bulk-checkin.c:154:5
#5 0x82467b in deflate_to_pack bulk-checkin.c:225:8
#6 0x823ff1 in index_bulk_checkin bulk-checkin.c:264:15
#7 0xa7cff2 in index_stream object-file.c:2234:9
#8 0xa7bff7 in index_fd object-file.c:2256:9
#9 0xa7d22d in index_path object-file.c:2274:7
#10 0xb3c8c9 in add_to_index read-cache.c:802:7
#11 0xb3e039 in add_file_to_index read-cache.c:835:9
#12 0x4a99c3 in add_files add.c:458:7
#13 0x4a7276 in cmd_add add.c:670:18
#14 0x4a1e76 in run_builtin git.c:461:11
#15 0x49e1e7 in handle_builtin git.c:714:3
#16 0x4a0c08 in run_argv git.c:781:4
#17 0x49d5a8 in cmd_main git.c:912:19
#18 0x7974da in main common-main.c:52:11
#19 0x7f75da66f349 in __libc_start_main (/lib64/libc.so.6+0x24349)
#20 0x421bd9 in _start start.S:120
Uninitialized value was stored to memory at
#0 0x7f75db58fa6b in crc32_little crc32.c:283:9
#1 0x7f75db58d5b3 in crc32_z crc32.c:220:20
#2 0x7f75db59668c in crc32 crc32.c:242:12
#3 0x8c94f8 in hashwrite csum-file.c:101:15
#4 0x825faf in stream_to_pack bulk-checkin.c:154:5
#5 0x82467b in deflate_to_pack bulk-checkin.c:225:8
#6 0x823ff1 in index_bulk_checkin bulk-checkin.c:264:15
#7 0xa7cff2 in index_stream object-file.c:2234:9
#8 0xa7bff7 in index_fd object-file.c:2256:9
#9 0xa7d22d in index_path object-file.c:2274:7
#10 0xb3c8c9 in add_to_index read-cache.c:802:7
#11 0xb3e039 in add_file_to_index read-cache.c:835:9
#12 0x4a99c3 in add_files add.c:458:7
#13 0x4a7276 in cmd_add add.c:670:18
#14 0x4a1e76 in run_builtin git.c:461:11
#15 0x49e1e7 in handle_builtin git.c:714:3
#16 0x4a0c08 in run_argv git.c:781:4
#17 0x49d5a8 in cmd_main git.c:912:19
#18 0x7974da in main common-main.c:52:11
#19 0x7f75da66f349 in __libc_start_main (/lib64/libc.so.6+0x24349)
Uninitialized value was stored to memory at
#0 0x447eb9 in __msan_memcpy msan_interceptors.cpp:1558:3
#1 0x7f75db5c2011 in flush_pending deflate.c:746:5
#2 0x7f75db5cafa0 in deflate_stored deflate.c:1815:9
#3 0x7f75db5bb7d2 in deflate deflate.c:1005:34
#4 0xd80b7f in git_deflate zlib.c:244:12
#5 0x825dff in stream_to_pack bulk-checkin.c:140:12
#6 0x82467b in deflate_to_pack bulk-checkin.c:225:8
#7 0x823ff1 in index_bulk_checkin bulk-checkin.c:264:15
#8 0xa7cff2 in index_stream object-file.c:2234:9
#9 0xa7bff7 in index_fd object-file.c:2256:9
#10 0xa7d22d in index_path object-file.c:2274:7
#11 0xb3c8c9 in add_to_index read-cache.c:802:7
#12 0xb3e039 in add_file_to_index read-cache.c:835:9
#13 0x4a99c3 in add_files add.c:458:7
#14 0x4a7276 in cmd_add add.c:670:18
#15 0x4a1e76 in run_builtin git.c:461:11
#16 0x49e1e7 in handle_builtin git.c:714:3
#17 0x4a0c08 in run_argv git.c:781:4
#18 0x49d5a8 in cmd_main git.c:912:19
#19 0x7974da in main common-main.c:52:11
Uninitialized value was stored to memory at
#0 0x447eb9 in __msan_memcpy msan_interceptors.cpp:1558:3
#1 0x7f75db644241 in _tr_stored_block trees.c:873:5
#2 0x7f75db5cad7c in deflate_stored deflate.c:1813:9
#3 0x7f75db5bb7d2 in deflate deflate.c:1005:34
#4 0xd80b7f in git_deflate zlib.c:244:12
#5 0x825dff in stream_to_pack bulk-checkin.c:140:12
#6 0x82467b in deflate_to_pack bulk-checkin.c:225:8
#7 0x823ff1 in index_bulk_checkin bulk-checkin.c:264:15
#8 0xa7cff2 in index_stream object-file.c:2234:9
#9 0xa7bff7 in index_fd object-file.c:2256:9
#10 0xa7d22d in index_path object-file.c:2274:7
#11 0xb3c8c9 in add_to_index read-cache.c:802:7
#12 0xb3e039 in add_file_to_index read-cache.c:835:9
#13 0x4a99c3 in add_files add.c:458:7
#14 0x4a7276 in cmd_add add.c:670:18
#15 0x4a1e76 in run_builtin git.c:461:11
#16 0x49e1e7 in handle_builtin git.c:714:3
#17 0x4a0c08 in run_argv git.c:781:4
#18 0x49d5a8 in cmd_main git.c:912:19
#19 0x7974da in main common-main.c:52:11
Uninitialized value was stored to memory at
#0 0x447eb9 in __msan_memcpy msan_interceptors.cpp:1558:3
#1 0x7f75db5c8fcf in deflate_stored deflate.c:1783:9
#2 0x7f75db5bb7d2 in deflate deflate.c:1005:34
#3 0xd80b7f in git_deflate zlib.c:244:12
#4 0x825dff in stream_to_pack bulk-checkin.c:140:12
#5 0x82467b in deflate_to_pack bulk-checkin.c:225:8
#6 0x823ff1 in index_bulk_checkin bulk-checkin.c:264:15
#7 0xa7cff2 in index_stream object-file.c:2234:9
#8 0xa7bff7 in index_fd object-file.c:2256:9
#9 0xa7d22d in index_path object-file.c:2274:7
#10 0xb3c8c9 in add_to_index read-cache.c:802:7
#11 0xb3e039 in add_file_to_index read-cache.c:835:9
#12 0x4a99c3 in add_files add.c:458:7
#13 0x4a7276 in cmd_add add.c:670:18
#14 0x4a1e76 in run_builtin git.c:461:11
#15 0x49e1e7 in handle_builtin git.c:714:3
#16 0x4a0c08 in run_argv git.c:781:4
#17 0x49d5a8 in cmd_main git.c:912:19
#18 0x7974da in main common-main.c:52:11
#19 0x7f75da66f349 in __libc_start_main (/lib64/libc.so.6+0x24349)
Uninitialized value was stored to memory at
#0 0x447eb9 in __msan_memcpy msan_interceptors.cpp:1558:3
#1 0x7f75db5ea545 in read_buf deflate.c:1181:5
#2 0x7f75db5c97f7 in deflate_stored deflate.c:1791:9
#3 0x7f75db5bb7d2 in deflate deflate.c:1005:34
#4 0xd80b7f in git_deflate zlib.c:244:12
#5 0x825dff in stream_to_pack bulk-checkin.c:140:12
#6 0x82467b in deflate_to_pack bulk-checkin.c:225:8
#7 0x823ff1 in index_bulk_checkin bulk-checkin.c:264:15
#8 0xa7cff2 in index_stream object-file.c:2234:9
#9 0xa7bff7 in index_fd object-file.c:2256:9
#10 0xa7d22d in index_path object-file.c:2274:7
#11 0xb3c8c9 in add_to_index read-cache.c:802:7
#12 0xb3e039 in add_file_to_index read-cache.c:835:9
#13 0x4a99c3 in add_files add.c:458:7
#14 0x4a7276 in cmd_add add.c:670:18
#15 0x4a1e76 in run_builtin git.c:461:11
#16 0x49e1e7 in handle_builtin git.c:714:3
#17 0x4a0c08 in run_argv git.c:781:4
#18 0x49d5a8 in cmd_main git.c:912:19
#19 0x7974da in main common-main.c:52:11
Uninitialized value was created by an allocation of 'ibuf' in the stack frame of function 'stream_to_pack'
#0 0x825710 in stream_to_pack bulk-checkin.c:101
SUMMARY: MemorySanitizer: use-of-uninitialized-value crc32.c:283:9 in crc32_little
Exiting
Signed-off-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
When we're hashing a value which is going to be an object ID, we want to
zero-pad that value if necessary. To do so, use the final_oid_fn
instead of the final_fn anytime we're going to create an object ID to
ensure we perform this operation.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Add and apply a semantic patch for converting code that open-codes
CALLOC_ARRAY to use it instead. It shortens the code and infers the
element size automatically.
Signed-off-by: René Scharfe <l.s.r@web.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
We declare a "struct hashfile_checkpoint" but only sometimes actually
call hashfile_checkpoint() on it. That makes it not immediately obvious
that it's valid when we later access its members.
In fact, the code is fine: we fill it in unconditionally in the while(1)
loop as long as "idx" is non-NULL. And then if "idx" is NULL, we exit
early from the function (because we're just computing the hash, not
actually writing), before we look at the struct.
However, this does seem to confuse gcc 9.2.1's -Wmaybe-uninitialized
when compiled with "-flto -O2" (probably because with LTO it can now
realize that our call to hashfile_truncate() does not set the members
either). Let's zero-initialize the struct to tell the compiler, as well
as any readers of the code, that all is well.
Reported-by: Stephan Beyer <s-beyer@gmx.net>
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The only remaining callers of has_sha1_file() actually have an object_id
already. They can use the "object" variant, rather than dereferencing
the hash themselves.
The code changes here were completely generated by the included
coccinelle patch.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Using the more restrictive oideq() should, in the long run,
give the compiler more opportunities to optimize these
callsites. For now, this conversion should be a complete
noop with respect to the generated code.
The result is also perhaps a little more readable, as it
avoids the "zero is equal" idiom. Since it's so prevalent in
C, I think seasoned programmers tend not to even notice it
anymore, but it can sometimes make for awkward double
negations (e.g., we can drop a few !!oidcmp() instances
here).
This patch was generated almost entirely by the included
coccinelle patch. This mechanical conversion should be
completely safe, because we check explicitly for cases where
oidcmp() is compared to 0, which is what oideq() is doing
under the hood. Note that we don't have to catch "!oidcmp()"
separately; coccinelle's standard isomorphisms make sure the
two are treated equivalently.
I say "almost" because I did hand-edit the coccinelle output
to fix up a few style violations (it mostly keeps the
original formatting, but sometimes unwraps long lines).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The conversion to pass "the_repository" and then "a_repository"
throughout the object access API continues.
* sb/object-store-grafts:
commit: allow lookup_commit_graft to handle arbitrary repositories
commit: allow prepare_commit_graft to handle arbitrary repositories
shallow: migrate shallow information into the object parser
path.c: migrate global git_path_* to take a repository argument
cache: convert get_graft_file to handle arbitrary repositories
commit: convert read_graft_file to handle arbitrary repositories
commit: convert register_commit_graft to handle arbitrary repositories
commit: convert commit_graft_pos() to handle arbitrary repositories
shallow: add repository argument to is_repository_shallow
shallow: add repository argument to check_shallow_file_for_update
shallow: add repository argument to register_shallow
shallow: add repository argument to set_alternate_shallow_file
commit: add repository argument to lookup_commit_graft
commit: add repository argument to prepare_commit_graft
commit: add repository argument to read_graft_file
commit: add repository argument to register_commit_graft
commit: add repository argument to commit_graft_pos
object: move grafts to object parser
object-store: move object access functions to object-store.h
Developer support update, by using BUG() macro instead of die() to
mark codepaths that should not happen more clearly.
* js/use-bug-macro:
BUG_exit_code: fix sparse "symbol not declared" warning
Convert remaining die*(BUG) messages
Replace all die("BUG: ...") calls by BUG() ones
run-command: use BUG() to report bugs, not die()
test-tool: help verifying BUG() code paths
This should make these functions easier to find and cache.h less
overwhelming to read.
In particular, this moves:
- read_object_file
- oid_object_info
- write_object_file
As a result, most of the codebase needs to #include object-store.h.
In this patch the #include is only added to files that would fail to
compile otherwise. It would be better to #include wherever
identifiers from the header are used. That can happen later
when we have better tooling for it.
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Precompute and store information necessary for ancestry traversal
in a separate file to optimize graph walking.
* ds/commit-graph:
commit-graph: implement "--append" option
commit-graph: build graph from starting commits
commit-graph: read only from specific pack-indexes
commit: integrate commit graph with commit parsing
commit-graph: close under reachability
commit-graph: add core.commitGraph setting
commit-graph: implement git commit-graph read
commit-graph: implement git-commit-graph write
commit-graph: implement write_commit_graph()
commit-graph: create git-commit-graph builtin
graph: add commit graph design document
commit-graph: add format document
csum-file: refactor finalize_hashfile() method
csum-file: rename hashclose() to finalize_hashfile()
In d8193743e0 (usage.c: add BUG() function, 2017-05-12), a new macro
was introduced to use for reporting bugs instead of die(). It was then
subsequently used to convert one single caller in 588a538ae5
(setup_git_env: convert die("BUG") to BUG(), 2017-05-12).
The cover letter of the patch series containing this patch
(cf 20170513032414.mfrwabt4hovujde2@sigill.intra.peff.net) is not
terribly clear why only one call site was converted, or what the plan
is for other, similar calls to die() to report bugs.
Let's just convert all remaining ones in one fell swoop.
This trick was performed by this invocation:
sed -i 's/die("BUG: /BUG("/g' $(git grep -l 'die("BUG' \*.c)
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
If we want to use a hashfile on the temporary file for a lockfile, then
we need finalize_hashfile() to fully write the trailing hash but also keep
the file descriptor open.
Do this by adding a new CSUM_HASH_IN_STREAM flag along with a functional
change that checks this flag before writing the checksum to the stream.
This differs from previous behavior since it would be written if either
CSUM_CLOSE or CSUM_FSYNC is provided.
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The hashclose() method behaves very differently depending on the flags
parameter. In particular, the file descriptor is not always closed.
Perform a simple rename of "hashclose()" to "finalize_hashfile()" in
preparation for functional changes.
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
See previous patch for explanation.
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Convert the index_bulk_checkin function, and the static functions it
calls, to use pointers to struct object_id.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Rename C++ keyword in order to bring the codebase closer to being able
to be compiled with a C++ compiler.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Convert uses of the direct SHA-1 functions to use the_hash_algo instead.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Rename struct sha1file to struct hashfile, along with all of its related
functions.
The transformation in this commit was made by global search-and-replace.
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Many callers of read_in_full() expect to see the exact
number of bytes requested, but their error handling lumps
together true read errors and short reads due to unexpected
EOF.
We can give more specific error messages by separating these
cases (showing errno when appropriate, and otherwise
describing the short read).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Convert struct pack_idx_entry to use struct object_id by changing the
definition and applying the following semantic patch, plus the standard
object_id transforms:
@@
struct pack_idx_entry E1;
@@
- E1.sha1
+ E1.oid.hash
@@
struct pack_idx_entry *E1;
@@
- E1->sha1
+ E1->oid.hash
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The encode_in_pack_object_header() writes a variable-length
header to an output buffer, but it doesn't actually know
long the buffer is. At first glance, this looks like it
might be possible to overflow.
In practice, this is probably impossible. The smallest
buffer we use is 10 bytes, which would hold the header for
an object up to 2^67 bytes. Obviously we're not likely to
see such an object, but we might worry that an object could
lie about its size (causing us to overflow before we realize
it does not actually have that many bytes). But the argument
is passed as a uintmax_t. Even on systems that have __int128
available, uintmax_t is typically restricted to 64-bit by
the ABI.
So it's unlikely that a system exists where this could be
exploited. Still, it's easy enough to use a normal out/len
pair and make sure we don't write too far. That protects the
hypothetical 128-bit system, makes it harder for callers to
accidentally specify a too-small buffer, and makes the
resulting code easier to audit.
Note that the one caller in fast-import tried to catch such
a case, but did so _after_ the call (at which point we'd
have already overflowed!). This check can now go away.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
