GT-2941: Generic support for moving "fat jar" to the end of the

classpath.

Ghidra/Framework/Utility/src/main/java/ghidra/GhidraLauncher.java

@@ -17,6 +17,7 @@ package ghidra;
 
 import java.io.*;
 import java.util.*;
+import java.util.stream.Collectors;
 
 import generic.jar.ResourceFile;
 import ghidra.framework.GModule;
@@ -59,7 +60,7 @@ public class GhidraLauncher {
 			addPatchPaths(classpathList, layout.getApplicationInstallationDir());
 			addModuleJarPaths(classpathList, layout.getModules());
 		}
-		classpathList = orderClasspath(classpathList);
+		classpathList = orderClasspath(classpathList, layout.getModules());
 
 		// Add the classpath to the class loader
 		GhidraClassLoader loader = (GhidraClassLoader) ClassLoader.getSystemClassLoader();
@@ -79,11 +80,11 @@ public class GhidraLauncher {
 	}
 
 	/**
-	 * Add patch jars to the given path list.  This should be done
-	 * first so they take precedence in the classpath.
+	 * Add patch jars to the given path list.  This should be done first so they take precedence in 
+	 * the classpath.
 	 * 
 	 * @param pathList The list of paths to add to.
-	 * @param appRootDirs The application root directories to search.
+	 * @param installDir The application installation directory.
 	 */
 	private static void addPatchPaths(List<String> pathList, ResourceFile installDir) {
 		ResourceFile patchDir = new ResourceFile(installDir, "Ghidra/patch");
@@ -186,17 +187,26 @@ public class GhidraLauncher {
 	 * Updates the list of paths to make sure the order is correct for any class-loading dependencies.
 	 *  
 	 * @param pathList The list of paths to order.
+	 * @param modules The modules on the classpath.
 	 * @return A new list with the elements of the original list re-ordered as needed.
 	 */
-	private static List<String> orderClasspath(List<String> pathList) {
+	private static List<String> orderClasspath(List<String> pathList,
+			Map<String, GModule> modules) {
+
+		//@formatter:off
+		Set<String> flatJars = modules
+			.values()
+			.stream()
+			.flatMap(m -> m.getFatJars().stream())
+			.collect(Collectors.toSet());
+		//@formatter:on
 
 		List<String> orderedList = new ArrayList<String>(pathList);
 
 		for (String path : pathList) {
-			if (path.endsWith("Renoir.jar")) { // Renoir.jar must be after all other jars
+			if (flatJars.contains(new File(path).getName())) {
 				orderedList.remove(path);
 				orderedList.add(path);
-				break;
 			}
 		}
 

Ghidra/Framework/Utility/src/main/java/ghidra/framework/GModule.java

@@ -43,6 +43,7 @@ public class GModule {
 	private ResourceFile moduleRoot;
 	private List<ResourceFile> searchRootsByPriority = new ArrayList<>();
 	private Set<String> dataSearchIgnoreDirs = new HashSet<>();
+	private Set<String> fatJars = new HashSet<>();
 
 	public GModule(Collection<ResourceFile> appRoots, ResourceFile moduleRoot) {
 
@@ -67,6 +68,7 @@ public class GModule {
 		try {
 			ModuleManifestFile manifestFile = new ModuleManifestFile(moduleRoot);
 			dataSearchIgnoreDirs = manifestFile.getDataSearchIgnoreDirs();
+			fatJars = manifestFile.getFatJars();
 		}
 		catch (IOException e) {
 			// don't care - if not using moduleManifest to find modules, then we don't
@@ -145,6 +147,10 @@ public class GModule {
 		return null;
 	}
 
+	public Set<String> getFatJars() {
+		return fatJars;
+	}
+
 	private void accumulateFilesByExtension(String extension, ResourceFile dir,
 			List<ResourceFile> accumulator) {
 		ResourceFile[] children = dir.listFiles();

Ghidra/Framework/Utility/src/main/java/utility/module/ModuleManifestFile.java

@@ -15,12 +15,11 @@
  */
 package utility.module;
 
-import generic.jar.ResourceFile;
-import ghidra.util.Msg;
-
 import java.io.*;
 import java.util.*;
 
+import generic.jar.ResourceFile;
+import ghidra.util.Msg;
 import utilities.util.FileUtilities;
 
 public class ModuleManifestFile {
@@ -32,6 +31,7 @@ public class ModuleManifestFile {
 	private static final String EXCLUDE_FROM_GHIDRA_JAR = "EXCLUDE FROM GHIDRA JAR";
 	private static final String DATA_SEARCH_IGNORE_DIR = "DATA SEARCH IGNORE DIR:";
 	private static final String MODULE_DIR_IDENTIFIER = "MODULE DIR:";
+	private static final String FAT_JAR = "FAT JAR:";
 //	private static final String EXTENSION_SUFFIX = "EXTENSION SUFFIX:";
 //	private static final String REQUIRES_CLASS_SEARCH = "REQUIRES CLASS SEARCH:";
 //	private static final String OWNER_IDENTIFIER = "MODULE DIR:";
@@ -46,6 +46,7 @@ public class ModuleManifestFile {
 	private Map<String, String> fileIPMap = new HashMap<String, String>();
 
 	private Set<String> dataSearchIgnoreDirs = new HashSet<String>();
+	private Set<String> fatJars = new HashSet<>();
 
 	public ModuleManifestFile(File moduleRootDir) throws IOException {
 		this(new ResourceFile(moduleRootDir));
@@ -108,6 +109,9 @@ public class ModuleManifestFile {
 		else if (trimmedLine.startsWith(MODULE_DIR_IDENTIFIER)) {
 			// do nothing for now
 		}
+		else if (trimmedLine.startsWith(FAT_JAR)) {
+			processFatJar(trimmedLine);
+		}
 		else {
 			String message =
 				"Module manifest file error on line " + (lineNumber + 1) + " of file: " + file +
@@ -144,6 +148,11 @@ public class ModuleManifestFile {
 		moduleName = line.substring(NAME_IDENTIFIER.length()).trim();
 	}
 
+	private void processFatJar(String line) {
+		String fatJar = line.substring(FAT_JAR.length()).trim();
+		fatJars.add(fatJar);
+	}
+
 	public String getModuleName() {
 		return moduleName;
 	}
@@ -151,4 +160,8 @@ public class ModuleManifestFile {
 	public Set<String> getDataSearchIgnoreDirs() {
 		return dataSearchIgnoreDirs;
 	}
+
+	public Set<String> getFatJars() {
+		return fatJars;
+	}
 }